Sequence ID | Eco_1 |
---|---|
Location | 4,173,495 – 4,173,580 |
Length | 85 |
Max. P | 0.600817 |
Location | 4,173,495 – 4,173,580 |
---|---|
Length | 85 |
Sequences | 6 |
Columns | 85 |
Reading direction | reverse |
Mean pairwise identity | 91.51 |
Mean single sequence MFE | -30.97 |
Consensus MFE | -28.45 |
Energy contribution | -28.15 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.09 |
Mean z-score | -1.11 |
Structure conservation index | 0.92 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.600817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4173495 85 - 1 CGUACUUCCCUACGGAAGCUAGUGAGAGGCGGUGGUUGAUGGCCGCGUGUCACACUACGGAGUUAAGCCUCGGCUUUUGGCCACC .((..(((.((((....).))).)))..))((((((..(.((((.((((......))))(((......))))))).)..)))))) ( -31.70) >Hin_1 1 82 - 1 CGUACUACCCCACGGAAGCUAGUGAGAGGCGGGGGUAGCUAACCGCGUGUCACACUACAGAGUUAAGCCUCGGCUUUUGGCC--- ............((((((((((((.((.(((.((........)).))).)).))))...(((......)))))))))))...--- ( -27.30) >Lpn_1 1 82 - 1 CGUACUACCCUACGGAAGCUAGUGAGAGGCGGGGGUAGCUGUCCGCGUGUCACACUAAGGAGUUAAACCUCGGCUUUUGGCC--- ............((((((((.((((.(.(((((.(....).))))).).))))......(((......)))))))))))...--- ( -26.90) >Sfl_1 1 85 - 1 CGUACUUCCCUACGGAAGCUAGUGAGAGGCGGUGAGUGAUGGCCGCGUGUCACACUACGGAGUUAAGCCUCGGCUUUUGGCCACC (((((((((....)))))...((((.(.(((((.(....).))))).).))))..))))(((......)))(((.....)))... ( -33.30) >Sty_1 1 85 - 1 CGUACUUCCCUACGGAAGCUAGUGAGAGGCGGUGAGUGAUGGCCGCGUGUCACACUACGGAGUUAAGCCUCGGCUUUUGGCCACC (((((((((....)))))...((((.(.(((((.(....).))))).).))))..))))(((......)))(((.....)))... ( -33.30) >Ype_1 1 85 - 1 CGUACUUCCCUACGGAAGCUAGUGAGAGGCGGUGAGUGAUGGCCGCGUGUCACACUACGGAGUUAAGCCUCGGCUUUUGGCCACC (((((((((....)))))...((((.(.(((((.(....).))))).).))))..))))(((......)))(((.....)))... ( -33.30) >consensus CGUACUUCCCUACGGAAGCUAGUGAGAGGCGGUGAGUGAUGGCCGCGUGUCACACUACGGAGUUAAGCCUCGGCUUUUGGCCACC ............((((((((.((((.(.(((((.(....).))))).).))))......(((......)))))))))))...... (-28.45 = -28.15 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:12:44 2006