Locus 35

Sequence ID	Eco_1
Location	4,167,609 – 4,167,729
Length	120
Max. P	0.875642

overview

Window 0

Location	4,167,609 – 4,167,729
Length	120
Sequences	4
Columns	120
Reading direction	forward
Mean pairwise identity	99.58
Mean single sequence MFE	-46.70
Consensus MFE	-45.88
Energy contribution	-46.12
Covariance contribution	0.25
Combinations/Pair	1.00
Mean z-score	-2.47
Structure conservation index	0.98
SVM decision value	0.89
SVM RNA-class probability	0.875642
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 4167609 120 + 1
GUAAAUAUCACCGGAGCACAGGGUCGGAAACUGACCCGGGGCACGCCUCGUAGCGGAAACGAGCAGUGGCAACACUAAGGUUUUGGGAGACGCUUACGCAGAGGGUUCUGCACAAGGCGA
.......((.(((((((...((((((....).)))))((((....))))((..((....)).))((((....))))...)))))))))..(((((..((((......))))...))))). ( -47.50)
>Sfl_1 959 120 + 1
GUAAAUAUCACCGGAGCACAGGGUCGGAAACUGACCCGGGGCACGCCUCGUAGCGGAAACGAGCAGUGGCAACACUAAGGUUUUGGGAGACGCUUACGCAGAGGGUUCUGCACAAGGCGA
.......((.(((((((...((((((....).)))))((((....))))((..((....)).))((((....))))...)))))))))..(((((..((((......))))...))))). ( -47.50)
>Sty_1 961 120 + 1
GUAAAUAUCACCGGAGCACAGGGUCGGAAACUGACCCGGGGCACGCCUCGUAGCGGAAACGAGCAGUGGCAACACUAAGGUUUUGGGAGACGCUUACGCAGAGGGUUCUGCACAAGGCGA
.......((.(((((((...((((((....).)))))((((....))))((..((....)).))((((....))))...)))))))))..(((((..((((......))))...))))). ( -47.50)
>Ype_1 958 120 + 1
GUAAAUAUCACCGGAGCACAGGGUCGGAAACUGACCCGGGGCACGCCUCGUAGCGGAAACGAGCAGUGGCAACACUAAGGUUUUGGGAGACGCUUACGAAGAGGGUUCUGCACAAGGCGA
...............((...((((((....).)))))...)).(((((.((.((((((.(((((((((....)))).........(....))))).(.....)).)))))))).))))). ( -44.30)
>consensus
GUAAAUAUCACCGGAGCACAGGGUCGGAAACUGACCCGGGGCACGCCUCGUAGCGGAAACGAGCAGUGGCAACACUAAGGUUUUGGGAGACGCUUACGCAGAGGGUUCUGCACAAGGCGA
.......((.(((((((...((((((....).)))))((((....))))((..((....)).))((((....))))...)))))))))..(((((..((((......))))...))))). (-45.88 = -46.12 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:12:30 2006