Sequence ID | Eco_1 |
---|---|
Location | 224,487 – 224,607 |
Length | 120 |
Max. P | 0.781832 |
Location | 224,487 – 224,607 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.11 |
Mean single sequence MFE | -40.95 |
Consensus MFE | -35.76 |
Energy contribution | -35.43 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.19 |
Mean z-score | -2.12 |
Structure conservation index | 0.87 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.781832 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 224487 120 - 1 UGAUCAACAGUGGGCGUCUUCUGUAUGACCCACAGCGUAACGCCCCCUGCCGCGCCGCUGUGGGUCGGUAGCCCCCUACUGACAUAACCGCUUCGCCGCAUUGGUGUAUACUACCCCUUU .......(((((((((.......((((.(((((((((...(((........))).)))))))))(((((((....))))))))))).......)))).)))))................. ( -43.54) >Hin_1 226 120 - 1 UGAUCUACAGCGAGCGUUUUCUGUACGACCCACAGCGUAACGCCCCCUGCCGCGCCGCUGUGGGUCGGUAGCCCCCCACUGACAUAACCUUGAAGCCACAUUGAUGUAUACUAUACCUUU .....((((.((((.(((...(((.((((((((((((...(((........))).)))))))))))).(((.......)))))).)))))))............))))............ ( -32.72) >Sty_1 226 120 - 1 UGAUCAACAGUGGGCGUCUUCUGUAUGACCCACAGCGUAACGCCCCCUGCCGCGCCGCUGUGGGUCGGUAGCCCCCUACUGACAUAACAGUUUCGCCGCAUUGGUGUAUACUACCCCUUU .......(((((((((....(((((((.(((((((((...(((........))).)))))))))(((((((....)))))))))).))))...)))).)))))................. ( -46.60) >consensus UGAUCAACAGUGGGCGUCUUCUGUAUGACCCACAGCGUAACGCCCCCUGCCGCGCCGCUGUGGGUCGGUAGCCCCCUACUGACAUAACCGUUUCGCCGCAUUGGUGUAUACUACCCCUUU .......(((((((.(.((......((((((((((((...(((........))).))))))))))))..)).).)))))))((((....((......))....))))............. (-35.76 = -35.43 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:09:38 2006