Locus 29

Sequence ID Eco_1
Location 3,999,200 – 3,999,320
Length 120
Max. P 0.980517
window38

overview

Window 8

Location 3,999,200 – 3,999,320
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -44.07
Consensus MFE -43.17
Energy contribution -43.50
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.70
Structure conservation index 0.98
SVM decision value 1.86
SVM RNA-class probability 0.980517
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 3999200 120 - 1
CUAGGAGUCCGGUAGCGAAGGUGUUAAAGCUCCAUCGCUGCGGGAUUGUGAAUCACUCUCGUUGGCAAACGAGGCUGGAAAGCAUUGGAUCAUUUGCGUGUUACACGACGUAUACUGGAA
((((.(((((.(((((((.((.((....)).)).))))))).)))))((((.(((..((((((....))))))(((....)))..))).)))).(((((........)))))..)))).. ( -45.00)
>Sfl_1 121 120 - 1
CUAGGAGUCCGGUAGCGAAGGUGUUAAAGCUCCAUCGCUGCGGGAUUGUGAAUCACUCUCGUUGGCAAACGAGGCUGGAAAGCAUUGGAUCAUUUGCGUGUUACACGACGUAUACUGGAA
((((.(((((.(((((((.((.((....)).)).))))))).)))))((((.(((..((((((....))))))(((....)))..))).)))).(((((........)))))..)))).. ( -45.00)
>Sty_1 29 120 - 1
CUAGGAGUCCGGUAGCGAAGGUGUUAAAGCUCCAUCGCUGCGGGAUUGUGCAUCACUCUCGUUGGCAAACGAGGCUGGAAAGCAUUGGAUCAUUUGGGUAUUACACAACGUAUACUGGAA
.....(((((.(((((((.((.((....)).)).))))))).)))))(((.(((...((((((....))))))(((....)))....))))))((.(((((.((.....))))))).)). ( -42.20)
>consensus
CUAGGAGUCCGGUAGCGAAGGUGUUAAAGCUCCAUCGCUGCGGGAUUGUGAAUCACUCUCGUUGGCAAACGAGGCUGGAAAGCAUUGGAUCAUUUGCGUGUUACACGACGUAUACUGGAA
((((.(((((.(((((((.((.((....)).)).))))))).)))))(((...(((.((((((....))))))(((....)))..............)))...)))........)))).. (-43.17 = -43.50 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:56 2006