Sequence ID | Eco_1 |
---|---|
Location | 3,942,672 – 3,942,792 |
Length | 120 |
Max. P | 0.606190 |
Location | 3,942,672 – 3,942,792 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 99.58 |
Mean single sequence MFE | -44.42 |
Consensus MFE | -43.58 |
Energy contribution | -43.83 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.98 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.606190 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3942672 120 + 1 CCCUAGCCGGCCUAUCAAGGUAGGCAUCCAGUCGAGCAGAAGAAACAUUUGGGCCAAGGAUCUGCCGGAAGACGGCCAGUCAGAGUGGAGUUACGGCCCGAUGGGUACUAGGCAGAGGAA .(((.(((.((((((....))))))(((((.((.....))........(((((((...(((..((((.....))))..)))...(((....)))))))))))))))....)))..))).. ( -45.00) >Sfl_1 959 120 + 1 CCCUAGCCGGCCUAUCAAGGUAGGCAUCCAGUCGAGCAGAAGAAACAUUUGGGCCAAGGAUCUGCCGGAAGACGGCCAGUCAGAGUGGAGUUACGGCCCGAUGGGUACUAGGCAGAGGAA .(((.(((.((((((....))))))(((((.((.....))........(((((((...(((..((((.....))))..)))...(((....)))))))))))))))....)))..))).. ( -45.00) >Sty_1 961 120 + 1 CCCUAGCCGGCCUAUCAAGGUAGGCAUCCAGUCGAGCAGAAGAAACAUUUGGGCCAAGGAUCUGCCGGAAGACGGCCAGUCAGAGUGGAGUUACGGCCCGAUGGGUACUAGGCAGAGGAA .(((.(((.((((((....))))))(((((.((.....))........(((((((...(((..((((.....))))..)))...(((....)))))))))))))))....)))..))).. ( -45.00) >Ype_1 958 120 + 1 CCCUAGCCGGCCUAUCAAGGUAGGCAUCCAGUCGAGCAGAAGAAACAUUUGGGCCAAGGAUCUGCCGGAAGACGGCCAGUCAGAGUGGAGUUACGGCCAGAUGGGUACUAGGCAGAGGAA .(((.(((.(((((((..(((.(((.((((.(((.((.(((......)))..)))...(((..((((.....))))..))).)).)))))))...))).)))))))....)))..))).. ( -42.70) >consensus CCCUAGCCGGCCUAUCAAGGUAGGCAUCCAGUCGAGCAGAAGAAACAUUUGGGCCAAGGAUCUGCCGGAAGACGGCCAGUCAGAGUGGAGUUACGGCCCGAUGGGUACUAGGCAGAGGAA .(((.(((.((((((....))))))(((((.((.....))........(((((((...(((..((((.....))))..)))...(((....)))))))))))))))....)))..))).. (-43.58 = -43.83 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:47 2006