Sequence ID | Eco_1 |
---|---|
Location | 3,940,125 – 3,940,245 |
Length | 120 |
Max. P | 0.776245 |
Location | 3,940,125 – 3,940,245 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 100.00 |
Mean single sequence MFE | -41.70 |
Consensus MFE | -41.70 |
Energy contribution | -41.70 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.68 |
Structure conservation index | 1.00 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.776245 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3940125 120 - 1 GUGGUCACGCAUCACAUGCCUACGCACGUGCGUAGGUACCCCUUUACUUUACCGAUCGCCUAGGCGGCUCUGCUCUUCGGCCAAUCCUGCGGUCUAUGUCACUCACGUUGUGUGAGCCGU ..(((((((((.(...(((((((((....)))))))))...............((((((..(((.((((.........))))...)))))))))............).))))))).)).. ( -41.70) >Sfl_1 441 120 - 1 GUGGUCACGCAUCACAUGCCUACGCACGUGCGUAGGUACCCCUUUACUUUACCGAUCGCCUAGGCGGCUCUGCUCUUCGGCCAAUCCUGCGGUCUAUGUCACUCACGUUGUGUGAGCCGU ..(((((((((.(...(((((((((....)))))))))...............((((((..(((.((((.........))))...)))))))))............).))))))).)).. ( -41.70) >Sty_1 441 120 - 1 GUGGUCACGCAUCACAUGCCUACGCACGUGCGUAGGUACCCCUUUACUUUACCGAUCGCCUAGGCGGCUCUGCUCUUCGGCCAAUCCUGCGGUCUAUGUCACUCACGUUGUGUGAGCCGU ..(((((((((.(...(((((((((....)))))))))...............((((((..(((.((((.........))))...)))))))))............).))))))).)).. ( -41.70) >consensus GUGGUCACGCAUCACAUGCCUACGCACGUGCGUAGGUACCCCUUUACUUUACCGAUCGCCUAGGCGGCUCUGCUCUUCGGCCAAUCCUGCGGUCUAUGUCACUCACGUUGUGUGAGCCGU ..(((((((((.(...(((((((((....)))))))))...............((((((..(((.((((.........))))...)))))))))............).))))))).)).. (-41.70 = -41.70 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:44 2006