| Sequence ID | Eco_1 |
|---|---|
| Location | 3,939,965 – 3,940,085 |
| Length | 120 |
| Max. P | 0.575078 |
| Location | 3,939,965 – 3,940,085 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 97.78 |
| Mean single sequence MFE | -41.83 |
| Consensus MFE | -41.03 |
| Energy contribution | -41.03 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.98 |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.575078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3939965 120 + 1 GAGGCUAGAUACAAGUCAGCCGACGCCGACGGAAGACCUAUAAGCUAGAUCGCGCGGCAGGGAUUAUCACAAGCCCUCGGUUAUUUCGGCGAUUCGUUGGAGUUGAUGAGGGCAAAACAG ((((((.(((....)))))))...((((.((...((.(((.....))).)).))))))........))....(((((((...(((((((((...)))))))))...)))))))....... ( -40.80) >Sfl_1 281 120 + 1 GAGGCUAGAUACAAGUCAGCCGACGCCGACGGGAGACCUAUAAGCUAGAUCGCGCGGCAGGGAUUAUCACAAGCCCUCGGUUAUUUCGGCGAUUCGUUGGAGUUGAUGAGGGCAAAACAG ((((((.(((....)))))))...((((.(((....)).....((......)))))))........))....(((((((...(((((((((...)))))))))...)))))))....... ( -43.90) >Sty_1 281 120 + 1 GAGGCUAGAUACAAGUCAGCCGACGCCGACGGAAGACCUAUAAGCUAGAUCGCGCGGCAGGGAUUAUCACAAGCCCUCGGUUAUUUCGGCGGUUCGUUGGAGUUGAUGAGGGCAAUACUG ((((((.(((....)))))))...((((.((...((.(((.....))).)).))))))........))....(((((((...(((((((((...)))))))))...)))))))....... ( -40.80) >consensus GAGGCUAGAUACAAGUCAGCCGACGCCGACGGAAGACCUAUAAGCUAGAUCGCGCGGCAGGGAUUAUCACAAGCCCUCGGUUAUUUCGGCGAUUCGUUGGAGUUGAUGAGGGCAAAACAG ((((((.(((....)))))))...((((.(((....)).....((......)))))))........))....(((((((...(((((((((...)))))))))...)))))))....... (-41.03 = -41.03 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:39 2006