Sequence ID | Eco_1 |
---|---|
Location | 3,939,685 – 3,939,805 |
Length | 120 |
Max. P | 0.992204 |
Location | 3,939,685 – 3,939,805 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -29.13 |
Consensus MFE | -27.25 |
Energy contribution | -27.03 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.09 |
Structure conservation index | 0.94 |
SVM decision value | 0.71 |
SVM RNA-class probability | 0.829853 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3939685 120 + 1 UUGAUCACUGAAAUUAACCAUCACUCAAUACCCCAUAGAAUUGAGAGUCCAGGAAAAGUUAAGGGAACUCUCAAAUGGGGUACAUUCGCGUGCAAAAUUGCCUAUUAACUCGAGAGAUUA ...................(((.(((..((((((((....((((((((((..((....))...)).)))))))))))))))).....(((........)))..........))).))).. ( -29.90) >Sfl_1 1 120 + 1 UUGAUCACUGAAAUUAACCAUCACUCAAUACCCCAUAGAAUUGAGAGUCCAGGAAAAGUUAAGGGAACUCUCAAAUGGGGUACAUUCGCGUGCAAAAUUGCCUAUUAACUCGAGAGAUUA ...................(((.(((..((((((((....((((((((((..((....))...)).)))))))))))))))).....(((........)))..........))).))).. ( -29.90) >Sty_1 1 120 + 1 UUGAUCACUGAAAUUAACCAUCACUCAAUACCCCAUAGAAUUGAGAGUCCAGGAAAAGUUAAGGCGAUUCUCAAAUGGGGUACAUUCGCGUGCAAAAUUGCCUAUUAACUCGAGAGAUUA ...................(((.(((..((((((((....((((((((((..((....))...).))))))))))))))))).....(((........)))..........))).))).. ( -27.60) >consensus UUGAUCACUGAAAUUAACCAUCACUCAAUACCCCAUAGAAUUGAGAGUCCAGGAAAAGUUAAGGGAACUCUCAAAUGGGGUACAUUCGCGUGCAAAAUUGCCUAUUAACUCGAGAGAUUA ...................(((.(((..((((((((....((((((((((..((....))..))..)))))))))))))))).....(((........)))..........))).))).. (-27.25 = -27.03 + -0.22)
Location | 3,939,685 – 3,939,805 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.33 |
Mean single sequence MFE | -36.36 |
Consensus MFE | -36.08 |
Energy contribution | -36.19 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.03 |
Mean z-score | -3.38 |
Structure conservation index | 0.99 |
SVM decision value | 2.31 |
SVM RNA-class probability | 0.992204 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3939685 120 - 1 UAAUCUCUCGAGUUAAUAGGCAAUUUUGCACGCGAAUGUACCCCAUUUGAGAGUUCCCUUAACUUUUCCUGGACUCUCAAUUCUAUGGGGUAUUGAGUGAUGGUUAAUUUCAGUGAUCAA ..(((.((.((((((((..(((....))).(((....(((((((((((((((((((..............))))))))))....)))))))))...)))...)))))))).)).)))... ( -38.04) >Sfl_1 1 120 - 1 UAAUCUCUCGAGUUAAUAGGCAAUUUUGCACGCGAAUGUACCCCAUUUGAGAGUUCCCUUAACUUUUCCUGGACUCUCAAUUCUAUGGGGUAUUGAGUGAUGGUUAAUUUCAGUGAUCAA ..(((.((.((((((((..(((....))).(((....(((((((((((((((((((..............))))))))))....)))))))))...)))...)))))))).)).)))... ( -38.04) >Sty_1 1 120 - 1 UAAUCUCUCGAGUUAAUAGGCAAUUUUGCACGCGAAUGUACCCCAUUUGAGAAUCGCCUUAACUUUUCCUGGACUCUCAAUUCUAUGGGGUAUUGAGUGAUGGUUAAUUUCAGUGAUCAA ..(((.((.((((((((..(((....))).(((....(((((((((((((((....((............))..))))))....)))))))))...)))...)))))))).)).)))... ( -33.00) >consensus UAAUCUCUCGAGUUAAUAGGCAAUUUUGCACGCGAAUGUACCCCAUUUGAGAGUUCCCUUAACUUUUCCUGGACUCUCAAUUCUAUGGGGUAUUGAGUGAUGGUUAAUUUCAGUGAUCAA ..(((.((.((((((((..(((....))).(((....((((((((((((((((((................)))))))))....)))))))))...)))...)))))))).)).)))... (-36.08 = -36.19 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:35 2006