Locus 22

Sequence ID	Eco_1
Location	3,425,806 – 3,425,926
Length	120
Max. P	0.903300

overview

Window 7

Location	3,425,806 – 3,425,926
Length	120
Sequences	5
Columns	120
Reading direction	forward
Mean pairwise identity	98.67
Mean single sequence MFE	-35.69
Consensus MFE	-34.40
Energy contribution	-34.28
Covariance contribution	-0.12
Combinations/Pair	1.05
Mean z-score	-1.48
Structure conservation index	0.96
SVM decision value	1.03
SVM RNA-class probability	0.903300
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 3425806 120 + 1
CUUGCGCCUGUACUGGGCAUUGACAAAUUAUCCAAUGCCUAUCGAGCCCUCGUUUGACUUUUCCAGCGUCCCGAGCGCUUGCCCGUCCUGCAAGUCUCGUUAGGCACACGUCUAUCGAUG
(((((........(((((((((..........))))))))).(((((.((((...(((.........))).)))).)))))........)))))..(((.(((((....))))).))).. ( -36.70)
>Hin_1 566 120 + 1
CUUGCGCCUGUACUGGGCAUUGACAAAUUAUCCAAUGCCUAUCGAGCCCUCGUUUGACUUUUCCAGCGUCCCGAGCGCUUGCCCGUCCUGCAAGUCUCGUUAGGCUCACAUUUAUCGAUG
........(((..(((((((((..........)))))))))..(((((..((((.((....)).))))...((((.((((((.......))))))))))...)))))))).......... ( -34.70)
>Sfl_1 566 120 + 1
CUUGCGCCUGUACUGGGCAUUGACAAAUUAUCCAAUGCCUAUCGAGCCCUCGUUUGACUUUUCCAGCGUCCCGAGCGCUUGCCCGUCCUGCAAGUCUCGUUAGGCACACGUCUAUCGAUG
(((((........(((((((((..........))))))))).(((((.((((...(((.........))).)))).)))))........)))))..(((.(((((....))))).))).. ( -36.70)
>Sty_1 566 120 + 1
CUUGCGCCUGUACUGGGCAUUGACAAAUUAUCCAAUGCCUAUCGAGCCCUCGUUUGACUUUUCCAGCGUCCCGAGCGCUUGCCCGUCCUGCAAGUCUCGUUAGUCACACGUCUAUCGAUG
..............((((((((..........))))))))(((((.....(((.(((((............((((.((((((.......))))))))))..))))).)))....))))). ( -33.64)
>Ype_1 567 120 + 1
CUUGCGCCUGUACUGGGCAUUGACAAAUUAUCCAAUGCCUAUCGAGCCCUCGUUUGACUUUUCCAGCGUCCCGAGCGCUUGCCCGUCCUGCAAGUCUCGUUAGGCACACGUCUAUCGAUG
(((((........(((((((((..........))))))))).(((((.((((...(((.........))).)))).)))))........)))))..(((.(((((....))))).))).. ( -36.70)
>consensus
CUUGCGCCUGUACUGGGCAUUGACAAAUUAUCCAAUGCCUAUCGAGCCCUCGUUUGACUUUUCCAGCGUCCCGAGCGCUUGCCCGUCCUGCAAGUCUCGUUAGGCACACGUCUAUCGAUG
..((.(((((..((((((((((..........)))))))..((((((....))))))......))).....((((.((((((.......)))))))))).))))).))((((....)))) (-34.40 = -34.28 +  -0.12)

alignment

secondary structure

dotplot

Window 8

Location	3,425,806 – 3,425,926
Length	120
Sequences	5
Columns	120
Reading direction	reverse
Mean pairwise identity	98.67
Mean single sequence MFE	-39.20
Consensus MFE	-38.08
Energy contribution	-38.48
Covariance contribution	0.40
Combinations/Pair	1.00
Mean z-score	-1.25
Structure conservation index	0.97
SVM decision value	0.30
SVM RNA-class probability	0.677100
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 3425806 120 - 1
CAUCGAUAGACGUGUGCCUAACGAGACUUGCAGGACGGGCAAGCGCUCGGGACGCUGGAAAAGUCAAACGAGGGCUCGAUAGGCAUUGGAUAAUUUGUCAAUGCCCAGUACAGGCGCAAG
............(((((((..((((.(((((.......)))))(.((((.(((..(....).)))...)))).)))))...((((((((........))))))))......))))))).. ( -40.60)
>Hin_1 566 120 - 1
CAUCGAUAAAUGUGAGCCUAACGAGACUUGCAGGACGGGCAAGCGCUCGGGACGCUGGAAAAGUCAAACGAGGGCUCGAUAGGCAUUGGAUAAUUUGUCAAUGCCCAGUACAGGCGCAAG
....(((((((.((((((((.((((.(((((.......)))))(.((((.(((..(....).)))...)))).))))).))))).)))....)))))))..(((((......)).))).. ( -37.10)
>Sfl_1 566 120 - 1
CAUCGAUAGACGUGUGCCUAACGAGACUUGCAGGACGGGCAAGCGCUCGGGACGCUGGAAAAGUCAAACGAGGGCUCGAUAGGCAUUGGAUAAUUUGUCAAUGCCCAGUACAGGCGCAAG
............(((((((..((((.(((((.......)))))(.((((.(((..(....).)))...)))).)))))...((((((((........))))))))......))))))).. ( -40.60)
>Sty_1 566 120 - 1
CAUCGAUAGACGUGUGACUAACGAGACUUGCAGGACGGGCAAGCGCUCGGGACGCUGGAAAAGUCAAACGAGGGCUCGAUAGGCAUUGGAUAAUUUGUCAAUGCCCAGUACAGGCGCAAG
........(.(((.(((((..((((.(((((.......)))))(.((((.(((..(....).)))...)))).)))))...((((((((........)))))))).))).)).))))... ( -37.10)
>Ype_1 567 120 - 1
CAUCGAUAGACGUGUGCCUAACGAGACUUGCAGGACGGGCAAGCGCUCGGGACGCUGGAAAAGUCAAACGAGGGCUCGAUAGGCAUUGGAUAAUUUGUCAAUGCCCAGUACAGGCGCAAG
............(((((((..((((.(((((.......)))))(.((((.(((..(....).)))...)))).)))))...((((((((........))))))))......))))))).. ( -40.60)
>consensus
CAUCGAUAGACGUGUGCCUAACGAGACUUGCAGGACGGGCAAGCGCUCGGGACGCUGGAAAAGUCAAACGAGGGCUCGAUAGGCAUUGGAUAAUUUGUCAAUGCCCAGUACAGGCGCAAG
............(((((((..((((.(((((.......)))))(.((((.(((..(....).)))...)))).)))))...((((((((........))))))))......))))))).. (-38.08 = -38.48 +   0.40)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:21 2006