Sequence ID | Eco_1 |
---|---|
Location | 3,425,521 – 3,425,641 |
Length | 120 |
Max. P | 0.903405 |
Location | 3,425,521 – 3,425,641 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.67 |
Mean single sequence MFE | -36.40 |
Consensus MFE | -32.54 |
Energy contribution | -32.82 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.10 |
Mean z-score | -1.45 |
Structure conservation index | 0.89 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.903405 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3425521 120 - 1 AAGCGCAUACUUAGUUAGGCGGAUAUUAUAAGAUCCAUAAGCCGAAAGCGGCGCAAAAUCGUCUGAGCGCGCCCGGGGCAGAGAUAGAUGGCCCGGUGGAAUCCAGAAGCAAAACAUCAC ..((((........((((((((((........))))....((((....))))........))))))))))(((((((.((........)).)))))(((...)))...)).......... ( -37.10) >Hin_1 281 120 - 1 AAGCGCACACUUAGUUAGGCGGAUAUUAUAAGAUCCAUAAGCCGAAAGCGGCGCAAAAUCGUCUGAGCGCGCUGGGGGCAGAGAUAGAUGGCCCGGUGGGGUCCAGAAGUAAAACAUAAG ..((((.(.(((.....(((((((........))))....)))..))).))))).......(((((.(.((((((.(.((........)).))))))).).).))))............. ( -33.90) >Sfl_1 281 120 - 1 AAGCGCAUACUUAGUUAGGCGGAUAUUAUAAGAUCCAUAAGCCGAAAGCGGCGCAAAAUCGUCUGAGCGCGCCCGGGGCAGAGAUAGAUGGCCCGGUGGAAUCCAGAAGCAAAACAUCAC ..((((........((((((((((........))))....((((....))))........))))))))))(((((((.((........)).)))))(((...)))...)).......... ( -37.10) >Sty_1 281 120 - 1 AAGCGCAUACUUAGUUAGGCGGAUAUUAUAAGAUCCAUAAGCCGAAAGCGGCGCAAAAUCGUCUGAGCGCGCCCGGGGCAGAGAUAGAUGGCCCGGUGGAAUCCAGAAGCAAAACAUCAC ..((((........((((((((((........))))....((((....))))........))))))))))(((((((.((........)).)))))(((...)))...)).......... ( -37.10) >Ype_1 281 120 - 1 AAGCGCAUACUUAGUUAGACGGACAUUACAAGAUCCAUAAGCCGAAAGCGGCGCAAAAUCGUCUGAGCGCGCUGGGGGCAGAGAUAGAUGGCCCGGUGGAUUCCAGGAGGAAAACAUAGC ..((((........((((((((((.......).)))....((((....))))........))))))))))(((.(((.((........)).))).(((..((((....))))..)))))) ( -36.80) >consensus AAGCGCAUACUUAGUUAGGCGGAUAUUAUAAGAUCCAUAAGCCGAAAGCGGCGCAAAAUCGUCUGAGCGCGCCCGGGGCAGAGAUAGAUGGCCCGGUGGAAUCCAGAAGCAAAACAUCAC ..((((........((((((((((........))))....((((....))))........))))))))))(((((((.((........)).)))))(((...)))...)).......... (-32.54 = -32.82 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:14 2006