Sequence ID | Eco_1 |
---|---|
Location | 3,424,122 – 3,424,242 |
Length | 120 |
Max. P | 0.963360 |
Location | 3,424,122 – 3,424,242 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.94 |
Mean single sequence MFE | -40.90 |
Consensus MFE | -37.35 |
Energy contribution | -36.59 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.17 |
Mean z-score | -2.37 |
Structure conservation index | 0.91 |
SVM decision value | 1.55 |
SVM RNA-class probability | 0.963360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3424122 120 - 1 GAUGUUGUUGCUAAAAACUUUCAGGGUAUGGAGGUCAAUAAAGGCCACUUUGCUCAGGCCUCUGUCGUAUUAACGCCCGGCUGGAAAUAAGCGACGGGGGAGAUCGAAAUGGUAGUAGCA .....((((((((....(((((.(((((.((.((((......)))).)).)))))...((((((((((.(((...((.....))...))))))))))))).....)))).).)))))))) ( -39.40) >Lpn_1 480 119 - 1 GAUGUUGUUGCUAAAAACUUUCUGGGCUUGGAGGCCAGUAAAGGCCUCGUUGUUCAGGCCUUUGCCGUAAUAACGCCGGGGAGGAAAAA-GCGGCGAGGGGAAUCGAAAUGGUAGAAGUA ..(.((((((((.....((((((.(((...((((((......))))))((((((..(((....)))..))))))))).))))))....)-))))))).)..................... ( -43.10) >Sty_1 480 120 - 1 GAUGUUGUUGCUAAAAACUUUCAGGGUAUGGUGGUCAAUAAAGGCCUCUUUGCUCAGGCCUCUGUCGUAUUAACGCCCGGCCGGAAAUAAGCGACGGGGGAGAUCGAAAUGGUAGUAGCA .....((((((((....(((((.(((((.((.((((......)))).)).)))))...((((((((((.(((...((.....))...))))))))))))).....)))).).)))))))) ( -40.20) >consensus GAUGUUGUUGCUAAAAACUUUCAGGGUAUGGAGGUCAAUAAAGGCCUCUUUGCUCAGGCCUCUGUCGUAUUAACGCCCGGCAGGAAAUAAGCGACGGGGGAGAUCGAAAUGGUAGUAGCA .....((((((((....(((((.(((((.((.((((......)))).)).)))))...((((((((((.......((.....))......)))))))))).....)))).).)))))))) (-37.35 = -36.59 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:10 2006