Sequence ID | Eco_1 |
---|---|
Location | 3,421,403 – 3,421,516 |
Length | 113 |
Max. P | 0.615057 |
Location | 3,421,403 – 3,421,516 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.94 |
Mean single sequence MFE | -34.30 |
Consensus MFE | -25.01 |
Energy contribution | -24.82 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.05 |
Mean z-score | -1.56 |
Structure conservation index | 0.73 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615057 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3421403 113 + 1 UCUUGGAAUGUAUCGUGUACGUUUACGGUC-CUU------CCAACCUACAUUCAUGGGCUCUUCGCCCAGCUGCCGCGCUGCACUGCAUCCGUACCGAUGUCUUCGAGACAUCUAGUAAC (((((((...(((((.(((((..(.((((.-...------..............(((((.....)))))((.((...)).)))))).)..))))))))))..)))))))........... ( -32.00) >Sfl_1 1 119 + 1 UCCUGCAAAAUGACGUAUAGGUCUACGGACCCCAACAGG-UCCGCCUACAUUCAUGGGCUCUUCGCCCAGCUGCCGCGCUGCACUGCAUCCGUACCGAUGUCUUCGAGACAUCUAGUAAC ...((((..((((.((.((((....((((((......))-)))))))).))))))((((.....)))).((.((...)).))..))))........((((((.....))))))....... ( -36.00) >Sty_1 1 113 + 1 UCUUGGAAUGUUUCGUGUACGUCUGCGGCC-CCU------CCAACCUACAUUCAUGGGCUCUACGCCCAGCUGCCGCGCUGCACUGCAUCCGUACCGAUGUCUUCGAGACAUCUAGUAAC ..(((((.(((((((...(((((.(((((.-...------..............(((((.....)))))...)))))((......)).........)))))...)))))))))))).... ( -35.10) >Ype_1 1 120 + 1 UCCUGCAAAAUGACGUAUAGGUCUACGGACCCCAACAGAAUCCGCCUACAUUUAUGGGCUCGUCGCCCAGCUGCCGCGCUGCACUGCAUCCGUACCGAUGUCUUCGAGACAUCUAGUAAC ...((((....((((....((((....))))............(((((......))))).))))...((((......))))...))))........((((((.....))))))....... ( -34.10) >consensus UCCUGCAAAAUGACGUAUACGUCUACGGAC_CCA______CCAACCUACAUUCAUGGGCUCUUCGCCCAGCUGCCGCGCUGCACUGCAUCCGUACCGAUGUCUUCGAGACAUCUAGUAAC .......................(((((..........................(((((.....)))))(((((......)))..))..)))))..((((((.....))))))....... (-25.01 = -24.82 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:06 2006