Sequence ID | Eco_1 |
---|---|
Location | 3,376,749 – 3,376,866 |
Length | 117 |
Max. P | 0.967288 |
Location | 3,376,749 – 3,376,866 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.60 |
Mean single sequence MFE | -36.73 |
Consensus MFE | -33.90 |
Energy contribution | -34.23 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.06 |
Mean z-score | -2.63 |
Structure conservation index | 0.92 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967288 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3376749 117 + 1 --AGCGUGCCUAAGACAUAGUCGAACGCGGCACAGUAGAAAGC-UCAUUGCUUGUGCAAAUUGCACAACUGGAAGCCGCUAUGGUACGAAAAGUUUAAAUAACGGCUCUAGUUGAGCACA --..((((((...(((...)))....(((((.((((...((((-.....))))((((.....)))).))))...)))))...))))))....(((.....))).((((.....))))... ( -39.90) >Sfl_1 56 117 + 1 --AGCGUGCCUAAGACAUAGUCGAACGCGGCACAGUAGAAAGC-UCAUUGCUUGUGCAAAUUGCACAACUGGAAGCCGCUAUGGUACGAAAAGUUUAAAUAACGGCUCUAGUUGAGCACA --..((((((...(((...)))....(((((.((((...((((-.....))))((((.....)))).))))...)))))...))))))....(((.....))).((((.....))))... ( -39.90) >Ype_1 57 120 + 1 CUAGCGUCCCUAAGACAUAGUCGAACGCGGCAUAGUAUGAAGCUUUCUUGGAUGUGCAAAUUGCACAACUAGAAGCCGCUAUGGUACGAGAAGUUUAAAUAACGGCUUUAAUUGAGCACA ...(((((.....)))...((((....))))...)).....((((...(((.(((((.....))))).)))(((((((.(((...((.....))....))).)))))))....))))... ( -30.40) >consensus __AGCGUGCCUAAGACAUAGUCGAACGCGGCACAGUAGAAAGC_UCAUUGCUUGUGCAAAUUGCACAACUGGAAGCCGCUAUGGUACGAAAAGUUUAAAUAACGGCUCUAGUUGAGCACA ....((((((...(((...)))....(((((.((((...((((......))))((((.....)))).))))...)))))...))))))....(((.....))).((((.....))))... (-33.90 = -34.23 + 0.34)
Location | 3,376,749 – 3,376,866 |
---|---|
Length | 117 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.60 |
Mean single sequence MFE | -33.80 |
Consensus MFE | -29.01 |
Energy contribution | -28.90 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -2.02 |
Structure conservation index | 0.86 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3376749 117 - 1 UGUGCUCAACUAGAGCCGUUAUUUAAACUUUUCGUACCAUAGCGGCUUCCAGUUGUGCAAUUUGCACAAGCAAUGA-GCUUUCUACUGUGCCGCGUUCGACUAUGUCUUAGGCACGCU-- ...((((((((.((((((((((....((.....))...))))))))))..)))(((((.....))))).....)))-))........(((((((((......))))....)))))...-- ( -35.90) >Sfl_1 56 117 - 1 UGUGCUCAACUAGAGCCGUUAUUUAAACUUUUCGUACCAUAGCGGCUUCCAGUUGUGCAAUUUGCACAAGCAAUGA-GCUUUCUACUGUGCCGCGUUCGACUAUGUCUUAGGCACGCU-- ...((((((((.((((((((((....((.....))...))))))))))..)))(((((.....))))).....)))-))........(((((((((......))))....)))))...-- ( -35.90) >Ype_1 57 120 - 1 UGUGCUCAAUUAAAGCCGUUAUUUAAACUUCUCGUACCAUAGCGGCUUCUAGUUGUGCAAUUUGCACAUCCAAGAAAGCUUCAUACUAUGCCGCGUUCGACUAUGUCUUAGGGACGCUAG ..(((.((((((((((((((((....((.....))...)))))))))).)))))).))).................................((((((..(((.....)))))))))... ( -29.60) >consensus UGUGCUCAACUAGAGCCGUUAUUUAAACUUUUCGUACCAUAGCGGCUUCCAGUUGUGCAAUUUGCACAAGCAAUGA_GCUUUCUACUGUGCCGCGUUCGACUAUGUCUUAGGCACGCU__ ..(((.(((((.((((((((((....((.....))...))))))))))..))))).)))....(((((..................))))).((((....(((.....)))..))))... (-29.01 = -28.90 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:11:01 2006