Sequence ID | Eco_1 |
---|---|
Location | 3,053,964 – 3,054,084 |
Length | 120 |
Max. P | 0.680064 |
Location | 3,053,964 – 3,054,084 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -39.23 |
Consensus MFE | -36.93 |
Energy contribution | -36.50 |
Covariance contribution | -0.43 |
Combinations/Pair | 1.13 |
Mean z-score | -1.71 |
Structure conservation index | 0.94 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.680064 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 3053964 120 + 1 UUUUCAAUCGAUGGUGGUUGCGCCAAACGAGUUCUCGCGCUCCUAGAUCUCGAUCUGGGAUGUGAACCACCCCAGUAGCUGCUGCCAGUGAAUUGGGUACAAACAUACGUUUGAGCGAUA ....((((((....))))))(((((((((.....(((((.((((((((....))))))))))))).....((((((.((((....))))..))))))..........)))))).)))... ( -41.20) >Sfl_1 1 120 + 1 UUUUCAAUCGAUGGUGGUUGCGCCAAACGAGUUCUCGCGCUCCUAGAUCUCGAUCUGGGAUGUGAACCACCCCAGUAGCUGCUGCCAGUGAAUUGGGUACAAACAUACGUUUGAGCGAUA ....((((((....))))))(((((((((.....(((((.((((((((....))))))))))))).....((((((.((((....))))..))))))..........)))))).)))... ( -41.20) >Sty_1 1 120 + 1 UUUUCAAUCAAUGGUGAUUGCGUCAAGCAGGUUCUUGCGUUCCUAGAUCUCGAUCUGCGAUGUGAACCACCCCAGUAGCUGCUGCCAGUGAAUUGGGUACAAACAUACGUUUGAGCGAUA ................(((((.((((((.(((((..(((((.(.((((....))))).))))))))))..((((((.((((....))))..))))))...........))))))))))). ( -35.30) >consensus UUUUCAAUCGAUGGUGGUUGCGCCAAACGAGUUCUCGCGCUCCUAGAUCUCGAUCUGGGAUGUGAACCACCCCAGUAGCUGCUGCCAGUGAAUUGGGUACAAACAUACGUUUGAGCGAUA ....((((((....))))))(((((((((.....(((((.((((((((....))))))))))))).....((((((.((((....))))..))))))..........)))))).)))... (-36.93 = -36.50 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:10:56 2006