Sequence ID | Eco_1 |
---|---|
Location | 2,945,627 – 2,945,708 |
Length | 81 |
Max. P | 0.690637 |
Location | 2,945,627 – 2,945,708 |
---|---|
Length | 81 |
Sequences | 6 |
Columns | 82 |
Reading direction | reverse |
Mean pairwise identity | 95.33 |
Mean single sequence MFE | -32.17 |
Consensus MFE | -29.99 |
Energy contribution | -30.10 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.00 |
Structure conservation index | 0.93 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.690637 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 2945627 81 - 1 -AUGCGAGCACUGUCCGGGGGACAGCUGCUGGUUAGUUUAUCCGUCCGCCAGGCCAGGCGUCGUACCUCAACGGCGCCAGCU -..(((((((((((((...)))))).))))((.........))...)))..(((..((((((((......)))))))).))) ( -32.50) >Hin_1 1 81 - 1 -AUGCGAACACUGUCCAGGGGACAGCUGUUGGUUAGUUUAUCCGUCCGCCAGGCCAGGCGUCGUACCUCAACGGCGCCAGCU -..(((((((((((((...)))))).))))((.........))...)))..(((..((((((((......)))))))).))) ( -30.10) >Lpn_1 1 81 - 1 -AUGCGAGCACUGUCCUGGGGACAGCUGAUGGUUAGUUUAUCCGUCCGCCAGGCCAGGCGUCGAACCUCAACGGCGCCAGCU -.....(((..((.(((((((((....(((((.....))))).)))).))))).))(((((((........))))))).))) ( -33.10) >Sfl_1 1 77 - 1 ---GCGAGCACUGUCCGGGGGACAGCUGCUGGUUAGUUUAUCCGUCCGCCAGGCCAGGCGUCGUACCUCAACGGCGCCAG-- ---((.((((((((((...)))))).)))).))..........(.((....)).).((((((((......))))))))..-- ( -31.70) >Sty_1 1 82 - 1 AGUGCGAGCACUGUCCGGGGGACAGCUGCUGGUUAGUUUAUCCGUCCGCCAGGCCAGGCGUCGUACCUCAACGGCGCCAGCU .(.(((((((((((((...)))))).))))((.........))...)))).(((..((((((((......)))))))).))) ( -33.10) >Ype_1 1 81 - 1 -AUGCGAGCACUGUCCGGGGGACAGCUGCUGGUUAGUUUAUCCGUCCGCCAGGCCAGGCGUCGUACCUCAACGGCGCCAGCU -..(((((((((((((...)))))).))))((.........))...)))..(((..((((((((......)))))))).))) ( -32.50) >consensus _AUGCGAGCACUGUCCGGGGGACAGCUGCUGGUUAGUUUAUCCGUCCGCCAGGCCAGGCGUCGUACCUCAACGGCGCCAGCU ...((.((((((((((...)))))).)))).))..........(.((....)).).((((((((......)))))))).... (-29.99 = -30.10 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:10:52 2006