Locus 15

Sequence ID Eco_1
Location 2,940,691 – 2,940,811
Length 120
Max. P 0.670888
window19

overview

Window 9

Location 2,940,691 – 2,940,811
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.78
Mean single sequence MFE -26.80
Consensus MFE -25.35
Energy contribution -25.47
Covariance contribution 0.11
Combinations/Pair 1.03
Mean z-score -1.73
Structure conservation index 0.95
SVM decision value 0.29
SVM RNA-class probability 0.670888
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 2940691 120 - 1
CAAGCCCCGCCUGUCAUUAUGACUAUAACGACAUUAAGGAUAGCUGUCAAAUAUUCAUUACACAUAGACUCCCUCCAUAGAUCUAGGAAGAGAAGCAAAACAAGGGGCUUGCCCCCCCAA
((((((((..((((....((((.(((...(((((((....))).))))..))).)))).....)))).(((..(((.((....))))).)))...........))))))))......... ( -27.10)
>Sfl_1 81 120 - 1
CAAGCCCCGCCUGUCAUUAUGACUAUAACGACAUUAAGGAUAGUUGUCAAAUAUUCAUUACACAUAGACUCCCUCCAUAGAUCUAGGAAGAGAAGCAAAACAAGGGGCUUGCCCCCCCAA
((((((((..((((....((((.(((...((((...........))))..))).)))).....)))).(((..(((.((....))))).)))...........))))))))......... ( -27.40)
>Sty_1 81 120 - 1
CAAGCCCCGCCUGUCAUUAUGACUAUAACGACAUUAAGGAUAGCCGUUAAAUACUCAUUACACAUAGACUCCCUCCAUAGAUCUAGGAAGAGAAGCAAAACAAGGGGCUUGCCCCCCCAA
(((((((((.(((((...(((.(......).)))....))))).).......................(((..(((.((....))))).)))...........))))))))......... ( -25.90)
>consensus
CAAGCCCCGCCUGUCAUUAUGACUAUAACGACAUUAAGGAUAGCUGUCAAAUAUUCAUUACACAUAGACUCCCUCCAUAGAUCUAGGAAGAGAAGCAAAACAAGGGGCUUGCCCCCCCAA
((((((((..((((....((((.(((...((((...........))))..))).)))).....)))).(((..(((.((....))))).)))...........))))))))......... (-25.35 = -25.47 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:10:48 2006