Sequence ID | Eco_1 |
---|---|
Location | 2,816,494 – 2,816,609 |
Length | 115 |
Max. P | 0.904558 |
Location | 2,816,494 – 2,816,609 |
---|---|
Length | 115 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.19 |
Mean single sequence MFE | -45.05 |
Consensus MFE | -37.54 |
Energy contribution | -37.85 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.15 |
Mean z-score | -2.26 |
Structure conservation index | 0.83 |
SVM decision value | 1.04 |
SVM RNA-class probability | 0.904558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 2816494 115 - 1 GUGCACGGCCUCUUGCCGUGCCCCUUACCGGUGACG-----CACGCCGGCGGGAUUACUACGUCGUGCCCCUCACAGGGGGGAUUUUAGUACCAUAAGCUAAUCCAGACGUAUACCACCG ..(((((((.....)))))))(((...((((((...-----..)))))).))).....((((((...((((.....))))((((..((((.......)))))))).))))))........ ( -47.20) >Sfl_1 1 115 - 1 GUGCACGGCCUCUUGCCGUGCCCCUUACCGGUGACG-----CACGCCGGCGGGAUUACUACGUCGUGCCCCUCACAGGGGGGAUUUUAGUACCAUAAGCUAAUCCAGACGUAUACCACCG ..(((((((.....)))))))(((...((((((...-----..)))))).))).....((((((...((((.....))))((((..((((.......)))))))).))))))........ ( -47.20) >Sty_1 1 115 - 1 GUGCACGGCCUCUUGCCGUGCCCCUUACCGGUGACG-----CACGCCGGCGGGAUUACUACGUCGUGCCCCUCACAGGGGGGAUUUUAGUACCAUAAGCUAAUCCAGACGUAUACCACCG ..(((((((.....)))))))(((...((((((...-----..)))))).))).....((((((...((((.....))))((((..((((.......)))))))).))))))........ ( -47.20) >Ype_1 1 120 - 1 GUACACAACCUCUUGCCGUGCUUCUUACCGGUGACGAUAUCCACGGCGCCGGGAUUACUACGUCGUGCCCCUCACAGGGGGGAUUUUAGUACCACAAGCUAAUCUAGAUGUGUACCACCG (((((((.(((..(((((((.....((.((....)).))..)))))))..)))..(((((....((.(((((....))))).))..))))).................)))))))..... ( -38.60) >consensus GUGCACGGCCUCUUGCCGUGCCCCUUACCGGUGACG_____CACGCCGGCGGGAUUACUACGUCGUGCCCCUCACAGGGGGGAUUUUAGUACCAUAAGCUAAUCCAGACGUAUACCACCG ..(((((((.....)))))))(((...((((((..........)))))).))).....((((((...((((.....))))((((..((((.......)))))))).))))))........ (-37.54 = -37.85 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:10:45 2006