Sequence ID | Eco_1 |
---|---|
Location | 4,604,312 – 4,604,472 |
Length | 160 |
Max. P | 0.864560 |
Location | 4,604,312 – 4,604,432 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -42.68 |
Consensus MFE | -40.13 |
Energy contribution | -42.47 |
Covariance contribution | 2.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.01 |
Structure conservation index | 0.94 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.806198 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4604312 120 + 1 AGUGCGAGCAAUAUCAACGUGGUUUUUGGUGCGAGGGGGGGGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAU .(((((((...........(((((((.((((..((.(((((........)))))..((((....)))).))..)))).)))))))(.(((...........))))...)))))))..... ( -44.00) >Sfl_1 241 120 + 1 AGUGCGAGCAAUAUCAACGUGAUUUUUGGUGCGAGGGGGGGGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAU .(((((((....(((.....)))....((((((((((((((........)))))..((((....)))).......)))((.((....)).)).........)).)))))))))))..... ( -40.50) >Sty_1 192 119 + 1 AGUGCGAGCAAUAUCAACGUGGUUUU-GGUGCGAGGGGGGGGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAU .(((((((..........((((..((-((((..((((((((........)))))..((((....)))).......)))((.((....)).))))))))..))))....)))))))..... ( -43.54) >consensus AGUGCGAGCAAUAUCAACGUGGUUUUUGGUGCGAGGGGGGGGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAU .(((((((...........(((((((.((((..((.(((((........)))))..((((....)))).))..)))).)))))))(.(((...........))))...)))))))..... (-40.13 = -42.47 + 2.33)
Location | 4,604,352 – 4,604,472 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -29.59 |
Consensus MFE | -27.45 |
Energy contribution | -29.34 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.03 |
Mean z-score | -2.22 |
Structure conservation index | 0.93 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.864560 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4604352 120 + 1 GGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAUCAAUUCUUAAAAAGAAUUGCUACCACGGAGGCGCAUUCUA (((.(((.........((((....))))..........((.((....)).))...))).)))((..((((((........(((((((.....)))))))......)))))).))...... ( -29.84) >Sfl_1 281 120 + 1 GGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAUCAAUUCUUAAAAAGAAUUGCUACCACGGAGGCGCAUUCUA (((.(((.........((((....))))..........((.((....)).))...))).)))((..((((((........(((((((.....)))))))......)))))).))...... ( -29.84) >Sty_1 231 120 + 1 GGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAUCGAUUCUUGAAAAGAAUCACUACCACGGAGGCGCAUUCUA (((.(((.........((((....))))..........((.((....)).))...))).)))((..((((((.........((((((.....)))))).......)))))).))...... ( -29.09) >consensus GGACUUGAACCCCCACGUCCGUAAGGACACUAACACCUGAAGCUAGCGCGUCUACCAAUUCCGCCACCUUCGCAUACCAUCAAUUCUUAAAAAGAAUUGCUACCACGGAGGCGCAUUCUA (((.(((.........((((....))))..........((.((....)).))...))).)))((..((((((........(((((((.....)))))))......)))))).))...... (-27.45 = -29.34 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:08:23 2006