Sequence ID | Eco_1 |
---|---|
Location | 2,728,740 – 2,728,860 |
Length | 120 |
Max. P | 0.825526 |
Location | 2,728,740 – 2,728,860 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 96.11 |
Mean single sequence MFE | -40.40 |
Consensus MFE | -37.65 |
Energy contribution | -38.10 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.03 |
Mean z-score | -2.04 |
Structure conservation index | 0.93 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.825526 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 2728740 120 + 1 GUUCCGCUAGACGUCAGGGUAUAACGGCCAGUGACUUGCAUUCCGCUUACACCCUGCCCUCGAUGACCGUACUGGUCAUUACUCGUCAGCGGCUACGGCCAUGUCCACAGCUGUUCAAAU ...(((((.((((.((((((.((((((..((((.....))))))).))).)))))).....(((((((.....)))))))...)))))))))..(((((..((....)))))))...... ( -40.10) >Hin_1 1 120 + 1 GUUCCCCUAGACGUCAGGGUAUAACGGCCAGUGUCUUGCAUUCCGCUUACGCCCUGGCCACCAUGACCGCACUGGUCAUUACUCGUCAGCGGCUACGGCCAUGUCCACAGCUGUUCAAAU .........((((((((((..((((((..((((.....))))))).)))..)))))))....((((((.....)))))).....)))((((((....))).((....)))))........ ( -41.00) >Sty_1 1 120 + 1 GUUCCGCUAGACGUCAGGGUAUAACGGCCAGUGACUUGCAUUCCGCUUACACCCUGCCCUCGAUGACCGUACUGGUCAUUACUCGUCAGCGGCUACGGCCAUGUCCACAGCUGUUCAAAU ...(((((.((((.((((((.((((((..((((.....))))))).))).)))))).....(((((((.....)))))))...)))))))))..(((((..((....)))))))...... ( -40.10) >consensus GUUCCGCUAGACGUCAGGGUAUAACGGCCAGUGACUUGCAUUCCGCUUACACCCUGCCCUCGAUGACCGUACUGGUCAUUACUCGUCAGCGGCUACGGCCAUGUCCACAGCUGUUCAAAU ...(((((.((((.((((((.((((((..((((.....))))))).))).)))))).....(((((((.....)))))))...)))))))))..(((((..((....)))))))...... (-37.65 = -38.10 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:10:36 2006