Sequence ID | Eco_1 |
---|---|
Location | 4,390,381 – 4,390,461 |
Length | 80 |
Max. P | 0.999973 |
Location | 4,390,381 – 4,390,461 |
---|---|
Length | 80 |
Sequences | 6 |
Columns | 80 |
Reading direction | forward |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -32.90 |
Consensus MFE | -32.79 |
Energy contribution | -32.68 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.08 |
Mean z-score | -2.46 |
Structure conservation index | 1.00 |
SVM decision value | 5.10 |
SVM RNA-class probability | 0.999973 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4390381 80 + 1 ACGCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCAAA ..(((((((..((((........))))..((((((((....).)))))))(((((.......))))))))))))...... ( -33.90) >Hin_1 1 78 + 1 --GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGCCUCGUUUCCCGCUCCAAA --(((((((..((((........))))..((((((((....).)))))))(((((.......))))))))))))...... ( -33.10) >Lpn_1 1 80 + 1 ACGCGGGAAUAGCUCAGUUGGUAGAGCAUAACCUUGCCAAGGUUAGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCAAA ..(((((((..((((........)))).((((((.....))))))(((.(.((....)).).)))..)))))))...... ( -28.50) >Sfl_1 1 80 + 1 AAGCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCAAA .((((((((..((((........))))..((((((((....).)))))))(((((.......)))))))))))))..... ( -34.40) >Sty_1 1 78 + 1 --GCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCAAA --(((((((..((((........))))..((((((((....).)))))))(((((.......))))))))))))...... ( -33.60) >Ype_1 1 80 + 1 ACGCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCAAA ..(((((((..((((........))))..((((((((....).)))))))(((((.......))))))))))))...... ( -33.90) >consensus ACGCGGGAAUAGCUCAGUUGGUAGAGCACGACCUUGCCAAGGUCGGGGUCGCGAGUUCGAGUCUCGUUUCCCGCUCCAAA ..(((((((..((((........))))..((((((((....).)))))))(((((.......))))))))))))...... (-32.79 = -32.68 + -0.11)
Location | 4,390,381 – 4,390,461 |
---|---|
Length | 80 |
Sequences | 6 |
Columns | 80 |
Reading direction | reverse |
Mean pairwise identity | 96.33 |
Mean single sequence MFE | -29.20 |
Consensus MFE | -29.27 |
Energy contribution | -28.72 |
Covariance contribution | -0.55 |
Combinations/Pair | 1.10 |
Mean z-score | -2.03 |
Structure conservation index | 1.00 |
SVM decision value | 4.37 |
SVM RNA-class probability | 0.999883 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4390381 80 - 1 UUUGGAGCGGGAAACGAGACUCGAACUCGCGACCCCGACCUUGGCAAGGUCGUGCUCUACCAACUGAGCUAUUCCCGCGU ......(((((((..(((.......)))(((((((((....)))...))))))((((........))))..))))))).. ( -29.90) >Hin_1 1 78 - 1 UUUGGAGCGGGAAACGAGGCUCGAACUCGCGACCCCGACCUUGGCAAGGUCGUGCUCUACCAACUGAGCUAUUCCCGC-- ......(((((((..(((.......)))(((((((((....)))...))))))((((........))))..)))))))-- ( -29.50) >Lpn_1 1 80 - 1 UUUGGAGCGGGAAACGAGACUCGAACUCGCGACCCUAACCUUGGCAAGGUUAUGCUCUACCAACUGAGCUAUUCCCGCGU ......(((((((.((((.......))))......((((((.....)))))).((((........))))..))))))).. ( -26.40) >Sfl_1 1 80 - 1 UUUGGAGCGGGAAACGAGACUCGAACUCGCGACCCCGACCUUGGCAAGGUCGUGCUCUACCAACUGAGCUAUUCCCGCUU ....(((((((((..(((.......)))(((((((((....)))...))))))((((........))))..))))))))) ( -31.30) >Sty_1 1 78 - 1 UUUGGAGCGGGAAACGAGACUCGAACUCGCGACCCCGACCUUGGCAAGGUCGUGCUCUACCAACUGAGCUAUUCCCGC-- ......(((((((..(((.......)))(((((((((....)))...))))))((((........))))..)))))))-- ( -28.20) >Ype_1 1 80 - 1 UUUGGAGCGGGAAACGAGACUCGAACUCGCGACCCCGACCUUGGCAAGGUCGUGCUCUACCAACUGAGCUAUUCCCGCGU ......(((((((..(((.......)))(((((((((....)))...))))))((((........))))..))))))).. ( -29.90) >consensus UUUGGAGCGGGAAACGAGACUCGAACUCGCGACCCCGACCUUGGCAAGGUCGUGCUCUACCAACUGAGCUAUUCCCGCGU ......(((((((.((((.......))))......((((((.....)))))).((((........))))..))))))).. (-29.27 = -28.72 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:08:16 2006