Sequence ID | Eco_1 |
---|---|
Location | 4,255,029 – 4,255,138 |
Length | 109 |
Max. P | 0.613569 |
Location | 4,255,029 – 4,255,138 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 83.79 |
Mean single sequence MFE | -26.55 |
Consensus MFE | -18.80 |
Energy contribution | -19.70 |
Covariance contribution | 0.90 |
Combinations/Pair | 1.16 |
Mean z-score | -1.87 |
Structure conservation index | 0.71 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613569 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4255029 109 + 1 CCCUUCCAGAAUUCGAUAAAUCUCUGGUUUAUUGUGCAGUUUAUGGUUCCAAAAUCGCCUUUUGCUGUAUAUACUCACAGCAUAACUGUAUAUACACCCAGGGGGCGGA .....((((((((((((((((.....))))))))...))))).)))........((((((((((.(((((((((.............)))))))))..)))))))))). ( -29.32) >Sfl_1 1 109 + 1 CCCUUCCAGAUUUCGAUAAAUCUCUGGUUUAUUGUGCAGUUUAUGGUUCCAAAAUCGCCUUUUGCUGUAUAUACUCACAGUAUAACUGUAUAUACACCCAGGGGGCGGA ....(((.(((((((((((((.....)))))))).........((....)))))))((((((((.(((((((((.............)))))))))..))))))))))) ( -29.42) >Sty_1 1 94 + 1 ---------------AUAAAUCUCUUGUUUUUUGCGCCGUUUGUGGUUCCAAAAUCACCUUUAACUGUAUAUACUCACAGCAUGAUUGUAUAUACACCCAGGGGGCGGA ---------------...................((((....((((((....))))))((((...((((((((((((.....)))..)))))))))...)))))))).. ( -20.90) >consensus CCCUUCCAGA_UUCGAUAAAUCUCUGGUUUAUUGUGCAGUUUAUGGUUCCAAAAUCGCCUUUUGCUGUAUAUACUCACAGCAUAACUGUAUAUACACCCAGGGGGCGGA ....................(((((((.....(((((((((...(((.........)))...((((((........)))))).))))))))).....)))))))..... (-18.80 = -19.70 + 0.90)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:08:13 2006