Locus 115

Sequence ID Eco_1
Location 4,210,013 – 4,210,133
Length 120
Max. P 0.643040
window425

overview

Window 5

Location 4,210,013 – 4,210,133
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 97.22
Mean single sequence MFE -43.97
Consensus MFE -42.55
Energy contribution -43.00
Covariance contribution 0.45
Combinations/Pair 1.03
Mean z-score -1.59
Structure conservation index 0.97
SVM decision value 0.23
SVM RNA-class probability 0.643040
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 4210013 120 - 1
CGGGGUCUUUCCGUCUUGCCGCGGGUACACUGCAUCUUCACAGCGAGUUCAAUUUCACUGAGUCUCGGGUGGAGACAGCCUGGCCAUCAUUACGCCAUUCGUGCAGGUCGGAACUUACCC
..((((..(((((.(((((.((((((...(((..(((((((..((((((((.......)))).)))).))))))))))...(((.........)))))))))))))).)))))...)))) ( -45.60)
>Hin_1 199 120 - 1
CGGGGUCUUUCCGUCUAGCCGCGGGUACACCGCAUCUUCACGGCGAUUUCAAUUUCACUGAGUCUCGGGUGGAGACAGCCUGGCCAUCAUUAUGCCAUUCGUGCAGGUCGGAACUUACCC
..((((..(((((.((.(((((((.....))))........(((((........))..(((...(((((((....)).)))))...)))....)))....).)).)).)))))...)))) ( -40.70)
>Ype_1 201 120 - 1
CGGGGUCUUUCCGUCUUGCCGCGGGUACACUGCAUCUUCACAGCGAGUUCAAUUUCACUGAGUCUCGGGUGGAGACAGCCUGGCCAUCAUUACGCCAUUCGUGCAGGUCGGAACUUACCC
..((((..(((((.(((((.((((((...(((..(((((((..((((((((.......)))).)))).))))))))))...(((.........)))))))))))))).)))))...)))) ( -45.60)
>consensus
CGGGGUCUUUCCGUCUUGCCGCGGGUACACUGCAUCUUCACAGCGAGUUCAAUUUCACUGAGUCUCGGGUGGAGACAGCCUGGCCAUCAUUACGCCAUUCGUGCAGGUCGGAACUUACCC
..((((..(((((.((((((((((.....)))).(((((((..((((((((.......)))).)))).)))))))..(..((((.........))))..)).))))).)))))...)))) (-42.55 = -43.00 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:08:11 2006