Sequence ID | Eco_1 |
---|---|
Location | 2,727,956 – 2,728,195 |
Length | 239 |
Max. P | 0.522618 |
Location | 2,727,956 – 2,728,075 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.47 |
Mean single sequence MFE | -42.52 |
Consensus MFE | -38.50 |
Energy contribution | -39.18 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.12 |
Mean z-score | -1.09 |
Structure conservation index | 0.91 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>Eco_1 2727956 119 - 1 CUCGCACGCGAUUAUAUGGGGGAGGAGA-CGCCUGCUAGCAGGCCGGUAGACGCAAUAGAACGCGUGUAUCCUUCCUCAGACGCGCGCUAUGUAUUAAACUACGACCGACGGGCAGGUUG ...((.((((......((((((((((.(-((((((....)))))......((((........)))))).))))))))))..)))).))..............(((((........))))) ( -45.40) >Hin_1 321 119 - 1 CUCGCACGCGAUUAUAUGGGGGAGGAGA-UGUUUGUUAGCAGGCCGGCAGACGCAAUAGAACGCGUGUAUCCUUCCUCAGACGCGCGCUAUGUAUUAAACUACGACCGACGGAGAGGUUG ...((.((((......((((((((((..-.((((((..(....)..))))))((........)).....))))))))))..)))).))..............(((((........))))) ( -39.90) >Sfl_1 321 119 - 1 CUCGCACGCGAUUAUAUGGGGGAGGAGA-CGCCUGCUAGCAGGCCGGUAGACGCAAUAGAACGCGUGUAUCCUUCCUCAGACGCGCGCUAUGUAUUAAACUACGACCGACGGGCAGGUUG ...((.((((......((((((((((.(-((((((....)))))......((((........)))))).))))))))))..)))).))..............(((((........))))) ( -45.40) >Sty_1 321 119 - 1 CUCGCACGCGAUUAUAUGGGGGAGGAGA-CGUAUGUUAGCAGGCCGGUAGACGCAAUAGAACGCGUGUAUCCUUCCUCAGACGCGCGCUAUGUAUUAAACUACGACCGACGGACAGGUUG ...((.((((......((((((((((.(-((..((((.....((.(.....))).....))))..))).))))))))))..)))).))..............(((((........))))) ( -38.60) >Ype_1 321 120 - 1 CUCGCACGCGAUUAUAUGGGGGAGGAGGCUAAACGGCAGCAGGCCGGUAGACGCAAUAUAACGUGUGUGUCCUUCCUCAGACGCGCGCUAUGUAUUAAACUACGACCGACGGGGAGGUUG ...((.((((......((((((((((.((....((((.....))))....((((........)))))).))))))))))..)))).))..............(((((........))))) ( -43.30) >consensus CUCGCACGCGAUUAUAUGGGGGAGGAGA_CGCAUGCUAGCAGGCCGGUAGACGCAAUAGAACGCGUGUAUCCUUCCUCAGACGCGCGCUAUGUAUUAAACUACGACCGACGGGCAGGUUG ...((.((((......((((((((((....(((((....)))))...((.((((........)))).))))))))))))..)))).))..............(((((........))))) (-38.50 = -39.18 + 0.68)
Location | 2,728,075 – 2,728,195 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.42 |
Mean single sequence MFE | -41.58 |
Consensus MFE | -32.08 |
Energy contribution | -33.04 |
Covariance contribution | 0.96 |
Combinations/Pair | 1.03 |
Mean z-score | -1.48 |
Structure conservation index | 0.77 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.522618 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 2728075 120 - 1 CAGGCGUGAAGAUAUAGACCUUCGAAUGGGUAGAUUCGUGUUAGUCCAGUGGGUGUAAGUGCACACGCCAGACUUCGUCUGGUGGCAGGAUCGCUGGAUGCUUGUGGCACUAAAUUCCUG ((((.((...((.((..((((......))))..))))(((((((((((((((((((....)))).((((((((...))))))))......))))))))).....))))))...)).)))) ( -41.50) >Hin_1 440 120 - 1 CUAGCGUGAAGAUAGUCACCUAAGCAUGGGUAGACUUGUGUUAGUCCAGUGGAAUUAAGUGCACACGCCAGACUUCGUCUGGUGGCAGGAUCGCUGGAUGCUUGUGGCACUAAAUUCCUG ((((((..(.....((((((((....))))).))))..))))))......((((((.(((((...((((((((...))))))))((((((((....))).))))).))))).)))))).. ( -45.80) >Sfl_1 440 120 - 1 CAGGCGUGAAGAUAUAGACCUUCGAAUGGGUAGAUUCGUGUUAGUCCAGUGGGUGUAAGUGCACACGCCAGACUUCGUCUGGUGGCAGGAUCGCUGGAUGCUUGUGGCACUAAAUUCCUG ((((.((...((.((..((((......))))..))))(((((((((((((((((((....)))).((((((((...))))))))......))))))))).....))))))...)).)))) ( -41.50) >Sty_1 440 120 - 1 CUAGCGUGAAGAUAUAGACCGUCAUAUGGGUAGGUCUCUGUUAGUCCAGUGGGUGUAAGUGCACACGCCAGACUUCGUCUGGUGGCAGGAUCGCUGGAUGCUUGUGGCACUAAAUUCCUG ((((((.((.(((....(((........)))..)))))))))))..(((.((((...(((((...((((((((...))))))))((((((((....))).))))).)))))..))))))) ( -40.40) >Ype_1 441 120 - 1 CAAGCGUGAAGAUAUACACCAUCUAAUGGGUAGCGGUUUGUUAGUCCAGUGGAUGUAAGUGCACACGCCAGACUUCGUCUGGUGGCAGGAUCGCUGGAUGCUUGUGGCACUAAAUUCCUG .....(((........)))((((((.((((((((.....)))).)))).))))))..(((((...((((((((...))))))))((((((((....))).))))).)))))......... ( -38.70) >consensus CAAGCGUGAAGAUAUAGACCUUCGAAUGGGUAGAUUUGUGUUAGUCCAGUGGGUGUAAGUGCACACGCCAGACUUCGUCUGGUGGCAGGAUCGCUGGAUGCUUGUGGCACUAAAUUCCUG (((((............(((........)))............(((((((((((((....)))).((((((((...))))))))......))))))))))))))................ (-32.08 = -33.04 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:10:32 2006