Sequence ID | Eco_1 |
---|---|
Location | 4,173,495 – 4,173,580 |
Length | 85 |
Max. P | 0.909301 |
Location | 4,173,495 – 4,173,580 |
---|---|
Length | 85 |
Sequences | 6 |
Columns | 85 |
Reading direction | forward |
Mean pairwise identity | 91.51 |
Mean single sequence MFE | -29.03 |
Consensus MFE | -27.16 |
Energy contribution | -27.05 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.21 |
Mean z-score | -1.37 |
Structure conservation index | 0.94 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.909301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4173495 85 + 1 GGUGGGGUUCCCGAGCGGCCAAAGGGAGCAGACUGUAAAUCUGCCGUCACAGACUUCGAAGGUUCGAAUCCUUCCCCCACCACCA ((((((((((((...........)))))).(((.(((....))).))).........(((((.......))))).)))))).... ( -31.80) >Hin_1 1 82 + 1 ---GGGGUUCCCGAGCGGCCAAAGGGGGCAGACUGUAAAUCUGUUGGCUCAGCCUUCGAAGGUUCGAAUCCUUCUCCCUCCACCA ---(((((((..((((..((....))((((((.......)))))).))))(((((....))))).)))))))............. ( -22.80) >Lpn_1 1 82 + 1 ---GGGGUUCCCGAGCGGUCAAAGGGAUCAGACUGUAAAUCUGACGGCUCAGCCUUCGAAGGUUCGAAUCCUUCCCCCUCCACCA ---((((.....((((.((((..((.......)).......)))).)))).......(((((.......)))))))))....... ( -24.20) >Sfl_1 1 85 + 1 GGUGGGGUUCCCGAGCGGCCAAAGGGAGCAGACUGUAAAUCUGCCGUCAUCGACUUCGAAGGUUCGAAUCCUUCCCCCACCACCA ((((((((((((...........)))))).(((.(((....))).))).........(((((.......))))).)))))).... ( -31.80) >Sty_1 1 85 + 1 GGUGGGGUUCCCGAGCGGCCAAAGGGAGCAGACUGUAAAUCUGCCGUCAUCGACUUCGAAGGUUCGAAUCCUUCCCCCACCACCA ((((((((((((...........)))))).(((.(((....))).))).........(((((.......))))).)))))).... ( -31.80) >Ype_1 1 85 + 1 GGUGGGGUUCCCGAGCGGCCAAAGGGAGCAGACUGUAAAUCUGCCGUCAUCGACUUCGAAGGUUCGAAUCCUUCCCCCACCACCA ((((((((((((...........)))))).(((.(((....))).))).........(((((.......))))).)))))).... ( -31.80) >consensus GGUGGGGUUCCCGAGCGGCCAAAGGGAGCAGACUGUAAAUCUGCCGUCACAGACUUCGAAGGUUCGAAUCCUUCCCCCACCACCA (((((((.((((...........))))(((((.......))))).(((...)))...(((((.......)))))))))))).... (-27.16 = -27.05 + -0.11)
Location | 4,173,495 – 4,173,580 |
---|---|
Length | 85 |
Sequences | 6 |
Columns | 85 |
Reading direction | reverse |
Mean pairwise identity | 91.51 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -28.10 |
Energy contribution | -28.93 |
Covariance contribution | 0.83 |
Combinations/Pair | 1.07 |
Mean z-score | -1.38 |
Structure conservation index | 0.88 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640954 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 4173495 85 - 1 UGGUGGUGGGGGAAGGAUUCGAACCUUCGAAGUCUGUGACGGCAGAUUUACAGUCUGCUCCCUUUGGCCGCUCGGGAACCCCACC ....((((((((((((.(((((....)))))(((...)))(((((((.....))))))).)))))..((....))...))))))) ( -33.10) >Hin_1 1 82 - 1 UGGUGGAGGGAGAAGGAUUCGAACCUUCGAAGGCUGAGCCAACAGAUUUACAGUCUGCCCCCUUUGGCCGCUCGGGAACCCC--- .(((.(((((.(((((.......)))))...(((...)))..(((((.....)))))...))))).)))....((....)).--- ( -25.90) >Lpn_1 1 82 - 1 UGGUGGAGGGGGAAGGAUUCGAACCUUCGAAGGCUGAGCCGUCAGAUUUACAGUCUGAUCCCUUUGACCGCUCGGGAACCCC--- .(((.(((((((((((.......)))))...(((...)))(((((((.....))))))))))))).)))....((....)).--- ( -31.50) >Sfl_1 1 85 - 1 UGGUGGUGGGGGAAGGAUUCGAACCUUCGAAGUCGAUGACGGCAGAUUUACAGUCUGCUCCCUUUGGCCGCUCGGGAACCCCACC ....((((((((((((.......)))))...(((((.(..(((((((.....)))))))..).)))))..........))))))) ( -33.60) >Sty_1 1 85 - 1 UGGUGGUGGGGGAAGGAUUCGAACCUUCGAAGUCGAUGACGGCAGAUUUACAGUCUGCUCCCUUUGGCCGCUCGGGAACCCCACC ....((((((((((((.......)))))...(((((.(..(((((((.....)))))))..).)))))..........))))))) ( -33.60) >Ype_1 1 85 - 1 UGGUGGUGGGGGAAGGAUUCGAACCUUCGAAGUCGAUGACGGCAGAUUUACAGUCUGCUCCCUUUGGCCGCUCGGGAACCCCACC ....((((((((((((.......)))))...(((((.(..(((((((.....)))))))..).)))))..........))))))) ( -33.60) >consensus UGGUGGUGGGGGAAGGAUUCGAACCUUCGAAGUCGAUGACGGCAGAUUUACAGUCUGCUCCCUUUGGCCGCUCGGGAACCCCACC ....((((((((((((.(((((....)))))(((...)))(((((((.....))))))).)))))..((....))...))))))) (-28.10 = -28.93 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:07:18 2006