Locus 104

Sequence ID Eco_1
Location 4,168,745 – 4,168,865
Length 120
Max. P 0.892267
window363

overview

Window 3

Location 4,168,745 – 4,168,865
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 90.56
Mean single sequence MFE -36.40
Consensus MFE -38.16
Energy contribution -35.83
Covariance contribution -2.32
Combinations/Pair 1.20
Mean z-score -1.19
Structure conservation index 1.05
SVM decision value 0.97
SVM RNA-class probability 0.892267
Prediction RNA

Download alignment: ClustalW | MAF

>Eco_1 4168745 120 + 1
AGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAACG
...........((((((..(((.((((.(.((.((.((...((..(((((....(((..(((....)))..))).)))))..))......)))))).).)))).)))..))))))..... ( -37.70)
>Hin_1 333 120 + 1
AGCUUGACACUGAACAUUGAAUUUUGAUGUGUAGGAUAGGUGGGAGCCUUUGAAGCAGUGACGCCAGUCAUUGUGGAGGCGACCUUGAAAUACCACCCUUUAACGUUUGAUGUUCUAACG
...........((((((..(((.((((.(.((.((.((...((..(((((....((((((((....)))))))).)))))..))......)))))).).)))).)))..))))))..... ( -37.10)
>Ype_1 335 120 + 1
AGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCCUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCAACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAACU
...........((((((..(((.((((.(((((....((((.((...((.....(((..(((....)))..)))))..)).)))).....)).)))...)))).)))..))))))..... ( -34.40)
>consensus
AGCUUGACACUGAACAUUGAGCCUUGAUGUGUAGGAUAGGUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUGUUUGAUGUUCUAACG
...........((((((..(((.((((.(.((.((.((...((..(((((....((((((((....)))))))).)))))..))......)))))).).)))).)))..))))))..... (-38.16 = -35.83 +  -2.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:07:16 2006