Locus 100

Sequence ID	Eco_1
Location	4,166,931 – 4,167,051
Length	120
Max. P	0.993967

overview

Window 4

Location	4,166,931 – 4,167,051
Length	120
Sequences	4
Columns	120
Reading direction	forward
Mean pairwise identity	92.64
Mean single sequence MFE	-45.87
Consensus MFE	-44.47
Energy contribution	-43.85
Covariance contribution	-0.62
Combinations/Pair	1.31
Mean z-score	-2.43
Structure conservation index	0.97
SVM decision value	2.44
SVM RNA-class probability	0.993967
Prediction	RNA

Download alignment: ClustalW | MAF

>Eco_1 4166931 120 + 1
CCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGU
((...((((....(((((((((((((.(((...((((((....))))))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... ( -46.70)
>Sfl_1 281 120 + 1
CCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGUGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUACUGUGAGCUCGAUGAGUAGGGCGGGACACGU
((...((((....(((((((((((((.(((...((((((....))))))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... ( -45.40)
>Sty_1 281 120 + 1
CCAGAGCCUGAAUCAGCAUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAGCGCAUGUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGU
((...((((....(((((((((((((.(((...((((((....))))))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... ( -49.30)
>Ype_1 281 120 + 1
CCAGAGUCUGAAUCAGUUUGUGUGUUAGUGGAAGCGUCUGGAAAGUCGCACGGUACAGGGUGAUAGUCCCGUACACCAAAAUGCACAGGCUGUGAACUCGAUGAGUAGGGCGGGACACGU
((...((((....(((((((((((((..(((..(((.((....)).)))...((((.(((.......))))))).))).)))))))))))))...((((...)))).)))).))...... ( -42.10)
>consensus
CCAGAGCCUGAAUCAGUGUGUGUGUUAGUGGAAGCGUCUGGAAAGGCGCGCGAUACAGGGUGACAGCCCCGUACACAAAAAUGCACAUGCUGUGAGCUCGAUGAGUAGGGCGGGACACGU
((...((((....(((((((((((((.(((...((((((....))))))....(((.((((....)))).))))))...)))))))))))))...((((...)))).)))).))...... (-44.47 = -43.85 +  -0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Fri Dec 1 11:07:08 2006