Sequence ID | Eco_1 |
---|---|
Location | 223,889 – 224,009 |
Length | 120 |
Max. P | 0.747833 |
Location | 223,889 – 224,009 |
---|---|
Length | 120 |
pre Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -42.04 |
Consensus MFE | -41.81 |
Energy contribution | -41.81 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.99 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747833 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>Eco_1 223889 120 + 1 GUCCAGGAACGGGUCUCUGAAUGGCCUCCUACCCUUAGGAAACGUCGUGCUACGGCGGGAGGAGCCAAAGCGUCGCCACCGUUGUGGAUGACUUAAAACAAAGGAAAAUAAGUGGAGGCU ...(((..(....)..)))...(((((((.((((((.(....)(((((.(((((((((..((.((....))....)).))))))))))))))........)))).......))))))))) ( -41.81) >Sfl_1 480 120 + 1 GUCCAGGAACGGGUCUCUGAAUGGCCUCCUACCCUUAGGAAACGUCGUGCUACGGCGGGAGGAGCCAAAGCGUCGCCACCGUUGUGGAUGACUUAAAACAAAGGAAAAUAAGUGGAGGCU ...(((..(....)..)))...(((((((.((((((.(....)(((((.(((((((((..((.((....))....)).))))))))))))))........)))).......))))))))) ( -41.81) >Sty_1 477 120 + 1 GUCCAGGAACGGGUCUCUGAAUGGCCUCCUACCCUUAGGAAACGUCGUACUACGGCGGGAGGAGCCAAAGCGUCGCCACCGUUGUGGAUGACUUAAAACAAAGGAAAGUAAGUGGAGGCU ...(((..(....)..)))...((((((((((((((.(....)(((((.(((((((((..((.((....))....)).))))))))))))))........))))...)))...))))))) ( -42.50) >consensus GUCCAGGAACGGGUCUCUGAAUGGCCUCCUACCCUUAGGAAACGUCGUGCUACGGCGGGAGGAGCCAAAGCGUCGCCACCGUUGUGGAUGACUUAAAACAAAGGAAAAUAAGUGGAGGCU ...(((..(....)..)))...(((((((.((((((.(....)(((((.(((((((((..((.((....))....)).))))))))))))))........)))).......))))))))) (-41.81 = -41.81 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Thu Dec 7 14:09:29 2006