Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,901,513 – 2,901,604 |
Length | 91 |
Max. P | 0.584332 |
Location | 2,901,513 – 2,901,604 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 86.63 |
Mean single sequence MFE | -31.34 |
Consensus MFE | -19.46 |
Energy contribution | -20.50 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.05 |
Mean z-score | -2.17 |
Structure conservation index | 0.62 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2901513 91 + 22224390 GUUGCUCUCGAUGUUGCUAGUUG-----------CCAGUUGAUAGUU--GCCGGUGUGCU-GUUGCUGCUGGCAGCGCAAAUCAAAGCGCAAUAUGUUGACUACA ((.(.((...(((((((..((((-----------(((((.((((((.--........)))-)))...)))))))))((........)))))))))...))).)). ( -29.50) >DroSec_CAF1 288254 91 + 1 GUUGCUUUCGAUGUUGCUAGUUG-----------CCAGUUGAUAGUU--GCCGGUGUGCU-GUUGCUGCUGGCAGCGCAAAUCAAAGCGCAAUAUGUUGACUACA ((.(((((.(((.((((..((((-----------(((((.((((((.--........)))-)))...)))))))))))))))))))))))............... ( -29.50) >DroEre_CAF1 311992 93 + 1 GUUGCUCUCGAUGUUGCUAGUUG-----------CCAGUUGAUAGUUGGGCUGGUGUGCU-GUUGCUGCUGGCAGCGCAAAUCAAAGCGCAAUAUGUUGACUACA ((.(.((...(((((((..((((-----------(((((.((((((...((....)))))-)))...)))))))))((........)))))))))...))).)). ( -29.80) >DroYak_CAF1 296581 91 + 1 GUUGCUCUCCAUGUUGCUAGUUG-----------CCAGUUGAUAGUU--GCUGGUGUGCU-GUUGCUGCUGGCAGCGCAAAUCAAAGCGCAAUAUGUUGACUACA ((.(.((..((((((((..((((-----------(((((.((((((.--((....)))))-)))...)))))))))((........))))))))))..))).)). ( -33.90) >DroAna_CAF1 455463 97 + 1 GUUGGU-----AGUUGCUAGUUGGUGGUAGAUGGCUAGUUGCUAGUUGGG---AAGAGCUGGUUGCUGCUGGCAGCGCAAAUCAAAGCGCAAUAUGUUGACUACA ....((-----((((....((..(..((((..((((..((.(.....).)---)..))))..))))..)..)).((((........))))........)))))). ( -34.00) >consensus GUUGCUCUCGAUGUUGCUAGUUG___________CCAGUUGAUAGUU__GCCGGUGUGCU_GUUGCUGCUGGCAGCGCAAAUCAAAGCGCAAUAUGUUGACUACA ....................................((((((((.....(((((((.((.....))))))))).((((........))))....))))))))... (-19.46 = -20.50 + 1.04)
Location | 2,901,513 – 2,901,604 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 86.63 |
Mean single sequence MFE | -22.11 |
Consensus MFE | -15.28 |
Energy contribution | -16.84 |
Covariance contribution | 1.56 |
Combinations/Pair | 1.12 |
Mean z-score | -1.81 |
Structure conservation index | 0.69 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.584332 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2901513 91 - 22224390 UGUAGUCAACAUAUUGCGCUUUGAUUUGCGCUGCCAGCAGCAAC-AGCACACCGGC--AACUAUCAACUGG-----------CAACUAGCAACAUCGAGAGCAAC .(((((......)))))((((((((((((..((((((..((...-.)).....(..--..)......))))-----------))....)))).))).)))))... ( -25.20) >DroSec_CAF1 288254 91 - 1 UGUAGUCAACAUAUUGCGCUUUGAUUUGCGCUGCCAGCAGCAAC-AGCACACCGGC--AACUAUCAACUGG-----------CAACUAGCAACAUCGAAAGCAAC .(((((......)))))((((((((((((..((((((..((...-.)).....(..--..)......))))-----------))....)))).))).)))))... ( -25.10) >DroEre_CAF1 311992 93 - 1 UGUAGUCAACAUAUUGCGCUUUGAUUUGCGCUGCCAGCAGCAAC-AGCACACCAGCCCAACUAUCAACUGG-----------CAACUAGCAACAUCGAGAGCAAC .(((((......)))))((((((((((((((((....))))...-......((((............))))-----------......)))).))).)))))... ( -23.00) >DroYak_CAF1 296581 91 - 1 UGUAGUCAACAUAUUGCGCUUUGAUUUGCGCUGCCAGCAGCAAC-AGCACACCAGC--AACUAUCAACUGG-----------CAACUAGCAACAUGGAGAGCAAC .............((((.((..(..((((((((....))))...-......((((.--.........))))-----------......))))..)..)).)))). ( -20.50) >DroAna_CAF1 455463 97 - 1 UGUAGUCAACAUAUUGCGCUUUGAUUUGCGCUGCCAGCAGCAACCAGCUCUU---CCCAACUAGCAACUAGCCAUCUACCACCAACUAGCAACU-----ACCAAC .(((((.......((((((........))((((....))))...........---........))))((((..............))))..)))-----)).... ( -16.74) >consensus UGUAGUCAACAUAUUGCGCUUUGAUUUGCGCUGCCAGCAGCAAC_AGCACACCAGC__AACUAUCAACUGG___________CAACUAGCAACAUCGAGAGCAAC .(((((......)))))((((((((((((((((....))))..........((((............)))).................)))).))).)))))... (-15.28 = -16.84 + 1.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:02 2006