Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,893,140 – 2,893,249 |
Length | 109 |
Max. P | 0.715077 |
Location | 2,893,140 – 2,893,249 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 88.13 |
Mean single sequence MFE | -25.87 |
Consensus MFE | -22.27 |
Energy contribution | -22.13 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.03 |
Mean z-score | -1.71 |
Structure conservation index | 0.86 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.715077 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2893140 109 + 22224390 UUUUCGAAUUCCCUUCCCAAGUGCUUGAACCAUAAUGUUGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACGCGCAAAUGAAACAUAUGUAAC ..............................((((.(((((....).((((((((((((((((((((.......))))))))...))).))))))))))))))))).... ( -22.70) >DroPse_CAF1 385622 108 + 1 CUCUGGAAUUCUCCUCCGU-CUGGCUCGGCCAUAAUGUCGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACGCGCAAAUGAAACAUAUGUAAC ....(((....)))..(((-.((((.((((......))))))...(((((((((((((((((((((.......))))))))...))).)))))))))).)).))).... ( -28.70) >DroSec_CAF1 279911 109 + 1 UUGUCGAAUUCCCUUCCCAAGUGCUUGAACCAUAAUGUUGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACGCGCAAAUGAAACAUAUGUAAC (((((((..........(((....)))..........))))))).(((((((((((((((((((((.......))))))))...))).))))))))))........... ( -24.65) >DroEre_CAF1 303524 109 + 1 UUUUGAAAUUCCCCUCCCAAAUGUUUCAACCAUAAUGUGGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACGCGCAAAUGAAACAUAUGUAAC .................((.(((((((..((((...))))........((((((((((((((((((.......))))))))...))).)))))))))))))).)).... ( -26.40) >DroAna_CAF1 442057 101 + 1 CUU------UC--UCCUCCACUGUUUCGACCAUAAUGUUGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACGCAAACAGACGCGCAAAUGAAACAUAUGUAAC ...------..--........(((((((.(((......))))......((((((((((((((((((.......))))))))...))).)))))))))))))........ ( -24.10) >DroPer_CAF1 404871 108 + 1 CUCUGGAAUUCUCCUCCGU-CUGGCUCGGCCAUAAUGUCGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACGCGCAAAUGAAACAUAUGUAAC ....(((....)))..(((-.((((.((((......))))))...(((((((((((((((((((((.......))))))))...))).)))))))))).)).))).... ( -28.70) >consensus CUUUGGAAUUCCCCUCCCAACUGCUUCAACCAUAAUGUUGGCAACUUUAUUUGCGGUUUUGUGUGACUGUAAAUUACACAAACAGACGCGCAAAUGAAACAUAUGUAAC ..............................((((.(((.(....)(((((((((((((((((((((.......))))))))...))).))))))))))))))))).... (-22.27 = -22.13 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:55 2006