Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,889,609 – 2,889,704 |
Length | 95 |
Max. P | 0.847466 |
Location | 2,889,609 – 2,889,704 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 89.31 |
Mean single sequence MFE | -22.02 |
Consensus MFE | -18.85 |
Energy contribution | -19.10 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.78 |
Structure conservation index | 0.86 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.847466 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2889609 95 + 22224390 AAUAAAAGUCCAGAUCUAGAUUCAGAUUCGGU-UCCGGUUACCCGGUUUCCCGGCUUCCCGGAUCUGGUACCC-CCCCCAAAGCCAAACCGCAUUUC .......((((((((((......)))......-(((((..(.((((....)))).)..)))))))))).))..-........((......))..... ( -23.10) >DroSec_CAF1 276425 87 + 1 AAUAAAAGUCCAGAUCUAGAUUCAGAUUCGGU-UCCGGC--------UUCCCGGUUUCCCGGAUCUGGUACCC-CCCUCCAAGCCAAACCGCAUUUC .......((((((((((.((.......))((.-.((((.--------...))))...)).)))))))).))..-........((......))..... ( -21.10) >DroSim_CAF1 246933 88 + 1 AAUAAAAGUCCAGAUCUAGAUUCAGAUUCGGU-UCCGGU--------UUCCCGGUUUCCCGGAUCUGGUACCCCCCCUCCAAGCCAAACCGCAUUUC .......((((((((((.((.......))((.-.((((.--------...))))...)).)))))))).))...........((......))..... ( -21.40) >DroYak_CAF1 284775 86 + 1 AAUAAAAGUCCAGAUCUAGAUUCAGAUUCGGUUUCCGGA--------UUCACGGGUUCCCGGAUCUGGUACC---CUCCCAAGCCAAACCGCAUUUC .......(((((((((........(((((((...)))))--------))..(((....)))))))))).)).---.......((......))..... ( -22.50) >consensus AAUAAAAGUCCAGAUCUAGAUUCAGAUUCGGU_UCCGGU________UUCCCGGUUUCCCGGAUCUGGUACCC_CCCCCCAAGCCAAACCGCAUUUC .......((((((((((.((.......))((...((((............))))...)).)))))))).))...........((......))..... (-18.85 = -19.10 + 0.25)
Location | 2,889,609 – 2,889,704 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 89.31 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -20.55 |
Energy contribution | -20.55 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 0.69 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.618815 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2889609 95 - 22224390 GAAAUGCGGUUUGGCUUUGGGGG-GGGUACCAGAUCCGGGAAGCCGGGAAACCGGGUAACCGGA-ACCGAAUCUGAAUCUAGAUCUGGACUUUUAUU .......((((..(.(((((((.-.....))...(((((..(.((((....)))).)..)))))-.))))).)..)))).................. ( -35.50) >DroSec_CAF1 276425 87 - 1 GAAAUGCGGUUUGGCUUGGAGGG-GGGUACCAGAUCCGGGAAACCGGGAA--------GCCGGA-ACCGAAUCUGAAUCUAGAUCUGGACUUUUAUU ......(((((((((((...((.-.....))...(((((....)))))))--------))).))-)))).(((((....)))))............. ( -29.20) >DroSim_CAF1 246933 88 - 1 GAAAUGCGGUUUGGCUUGGAGGGGGGGUACCAGAUCCGGGAAACCGGGAA--------ACCGGA-ACCGAAUCUGAAUCUAGAUCUGGACUUUUAUU .......(((((((((((((...((....))...))))))...((((...--------.)))).-.)))))))....((((....))))........ ( -30.00) >DroYak_CAF1 284775 86 - 1 GAAAUGCGGUUUGGCUUGGGAG---GGUACCAGAUCCGGGAACCCGUGAA--------UCCGGAAACCGAAUCUGAAUCUAGAUCUGGACUUUUAUU .....((......))....(((---(((.((((((((((....))).((.--------((.(....).)).))........)))))))))))))... ( -24.10) >consensus GAAAUGCGGUUUGGCUUGGAGGG_GGGUACCAGAUCCGGGAAACCGGGAA________ACCGGA_ACCGAAUCUGAAUCUAGAUCUGGACUUUUAUU .....((......))..........(((.((((((((((....)))..............((((.......))))......))))))))))...... (-20.55 = -20.55 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:54 2006