Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,885,029 – 2,885,125 |
Length | 96 |
Max. P | 0.928099 |
Location | 2,885,029 – 2,885,125 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 60.62 |
Mean single sequence MFE | -20.93 |
Consensus MFE | -6.90 |
Energy contribution | -8.90 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.33 |
Mean z-score | -2.35 |
Structure conservation index | 0.33 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928099 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2885029 96 - 22224390 AAAAAGGUUUUCCUUUUACUUUUCGACAGGUAAUGAAAGUCCUUUCAACUUGUCAGAAAAUUUAAACUUAGAGAGUUUCAGUGUCUUU--------AAAUACGC .((((((....))))))..((((((((((((..(((((....)))))))))))).))))).......(((((((.........)))))--------))...... ( -20.90) >DroPse_CAF1 373593 96 - 1 GAUUCCCCCCCCUCCACGUUAUCUAUGUAUUUCCACUCCUCCAGCAUCUUCAUCUCCACCUCUUCGGGGAGCUUUUUAUGGCUCCUCG--------AUGGCUCU ...............((((.....))))..............................((...((((((((((......)))))))))--------).)).... ( -20.00) >DroSec_CAF1 271999 89 - 1 AAAAAGGUUUUCCUUUUACU-UUCGACAGGUA-UGAAAGUC-UUUCGACUUGUCAGAAAAUUC--ACUUAGA-AG-CUCAGUAUCUUU--------AAAUAUGC .((((((....))))))..(-((((((((((.-((((....-.))))))))))).))))....--.......-..-............--------........ ( -16.20) >DroSim_CAF1 241485 95 - 1 AAAAAGGUUUUCCUUUUACUUUUCGACAGGUAAUGAAAGUCCUUUCAACUUGUCAGAAAAUUUCAACUUAGAGAG-CUCAGUAUCUUU--------AAAUAUGC .((((((....))))))..((((((((((((..(((((....)))))))))))).))))).......(((((((.-.......)))))--------))...... ( -22.60) >DroEre_CAF1 295500 103 - 1 AAAAAGGUUUUCCUUUUACUUUUCGACAGGUUACGAAAGUCCUCUUAACUUGUCUGCAGAUUUAAACUUGGCGUA-CUCUGCAUCUUUUCAUUCUAAUGAACUU .((((((....)))))).......(((((((((.((......)).)))))))))((((((...............-.))))))....(((((....)))))... ( -23.19) >DroYak_CAF1 280263 103 - 1 AAAAAGGUUUUCCUUUCACUUUUCGACAGGUUCUAAAAGUCCUUUUAACUUGUCGGGAAAUUUAAACUAAGAGGG-GUCGGUAUCUUUUCACUAUAAAAAACUC .(((((((...((((((..((..((((((((..(((((....)))))))))))))..)).((......)))))))-).....)))))))............... ( -22.70) >consensus AAAAAGGUUUUCCUUUUACUUUUCGACAGGUAAUGAAAGUCCUUUCAACUUGUCAGAAAAUUUAAACUUAGAGAG_CUCAGUAUCUUU________AAAUACGC .((((((....)))))).......(((((((..(((((....)))))))))))).................................................. ( -6.90 = -8.90 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:53 2006