Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,884,677 – 2,884,778 |
Length | 101 |
Max. P | 0.994243 |
Location | 2,884,677 – 2,884,778 |
---|---|
Length | 101 |
Sequences | 5 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 96.70 |
Mean single sequence MFE | -25.86 |
Consensus MFE | -24.30 |
Energy contribution | -24.18 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.07 |
Mean z-score | -1.83 |
Structure conservation index | 0.94 |
SVM decision value | 2.46 |
SVM RNA-class probability | 0.994243 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2884677 101 - 22224390 AAAUUUUGGCUACGAAAAUGUUUUGUUGUCAAAUUUCCAC-CACGAGGCGACAAUCAAAUUUAUCCAUGGGUU---CUCGGGGUGUUUUUGAUGCCCCAUAAAAA ....((((((.(((((.....))))).)))))).......-...(.(((....((((((..(((((.(((...---.))))))))..))))))))).)....... ( -22.60) >DroSec_CAF1 271648 102 - 1 AAAUUUUGGCAACGAAAAUGUUUUGUUGUCAAAUUUCCACCCACGAGGUGACAAUCAAAUUUAUCCAUGGGUU---CUCGGGGUGUUUUUGAUGCCCCAUAAAAA ....((((((((((((.....)))))))))))).....(((((.(.(((((.........)))))).))))).---...((((((((...))))))))....... ( -30.50) >DroSim_CAF1 241119 102 - 1 AAAUUUUGGCUACGAAAAUGUUUUGUUGUCAAAUUUCCACCCACGAGGCGACAAUCAAAUUUAUCCAUGGGUU---CUCGGGGUGUUUUUGAUGCCCCAUAAAAA ....((((((.(((((.....))))).)))))).....(((((.(.(..((.........))..)).))))).---...((((((((...))))))))....... ( -23.10) >DroEre_CAF1 295094 104 - 1 AAAUUUUGGCUACGAAAAUGUUUUGUUGUCAAAUUUCCAC-CACGAGGCGACAAUCAAAUUCAUCCAUGGGUUCGUCUCGGGGUGUUUUUGAUGCCCCAUAAAAA ....((((((.(((((.....))))).)))))).......-...(((((((...(((..........)))..)))))))((((((((...))))))))....... ( -28.30) >DroYak_CAF1 279860 100 - 1 AAAU-UUGGCUACGAAAAUGUUUUGUUGUCAAAUUUCCAC-CACGAGGCGACAAUCAAAUUUAUCCAUGGGUU---CUCGGGGUGUUUUUGAUGCCCCAUAAAAA ((((-(((((.(((((.....))))).)))))))))....-...(.(((....((((((..(((((.(((...---.))))))))..))))))))).)....... ( -24.80) >consensus AAAUUUUGGCUACGAAAAUGUUUUGUUGUCAAAUUUCCAC_CACGAGGCGACAAUCAAAUUUAUCCAUGGGUU___CUCGGGGUGUUUUUGAUGCCCCAUAAAAA ....((((((.(((((.....))))).))))))...........(.(((....((((((..(((((.((((.....)))))))))..))))))))).)....... (-24.30 = -24.18 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:52 2006