Locus 992

Sequence ID X_DroMel_CAF1
Location 2,882,566 – 2,882,666
Length 100
Max. P 0.587608
window1605

overview

Window 5

Location 2,882,566 – 2,882,666
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 78.49
Mean single sequence MFE -16.89
Consensus MFE -9.77
Energy contribution -9.37
Covariance contribution -0.40
Combinations/Pair 1.25
Mean z-score -1.75
Structure conservation index 0.58
SVM decision value 0.11
SVM RNA-class probability 0.587608
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2882566 100 - 22224390
AGAGUCUUUCGGUAAAAGAAAAUCGGACGAAAAAGGGGCUUAAAUCGGAUGGGGACAAACAGAAAAAAAAAUAAAAAAAACGAUUGAAGUUCAAGUUGAG
....((.((((((........)))))).)).....((((((.(((((..((....)).......................))))).))))))........ ( -14.91)
>DroSec_CAF1 269611 91 - 1
AGAGCCUUUCGGUAGAAGAAAACCGGACGAA-AGGGGGCUUAAAUCAGGUGAGGACAAACAGAAAAA--------AAAAACGAUUGAAGUUCAAGUUGAG
.((((((((((((........))))))(...-.).))))))...((((.(..((((...........--------.............)))).).)))). ( -18.66)
>DroSim_CAF1 239076 91 - 1
AGAGCCUUUCGGUAGAAGAAAACCGGACGAA-AGGGGGCUUAAAUCAGGUAAGGACAAACAGAAAAA--------AAAAAUGAUUGAAGUUCAAGUUGAG
.((((((((((((........))))))(...-.).))))))...((((.(..((((...........--------.............)))).).)))). ( -17.26)
>DroEre_CAF1 293054 87 - 1
A--GCCGUUUGGUAGAAGCAAACCGAACCAAAAGGGGGCUUAAAUCAGGUGAGGACAAACAGAA-----------CAAAACGAUUGAAGUUCAAGUUGAG
.--..((..((((..((((...((.........))..))))..))))..))....(((...(((-----------(............))))...))).. ( -15.90)
>DroYak_CAF1 277813 92 - 1
A--GCAAUUUGGUAGAAGCAAACCGAACGAAAAACGUAC-UAAAUCAAGUGGGGACGAU-UGAA----CGACGUAAAGAACGAUUGAAGUUCAAGUUGAC
.--.(((((((((........)))((((...........-....((((.((....)).)-))).----((((((.....))).)))..)))))))))).. ( -17.70)
>consensus
AGAGCCUUUCGGUAGAAGAAAACCGGACGAAAAGGGGGCUUAAAUCAGGUGAGGACAAACAGAAAAA________AAAAACGAUUGAAGUUCAAGUUGAG
.......((((((........))))))........((((((.((((...................................)))).))))))........ ( -9.77 =  -9.37 +  -0.40) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:51 2006