Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,880,306 – 2,880,396 |
Length | 90 |
Max. P | 0.999393 |
Location | 2,880,306 – 2,880,396 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 70.49 |
Mean single sequence MFE | -19.62 |
Consensus MFE | -12.17 |
Energy contribution | -12.17 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.76 |
Structure conservation index | 0.62 |
SVM decision value | 3.57 |
SVM RNA-class probability | 0.999393 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2880306 90 + 22224390 AGAAGUGUGGGCAGUUGGCUGCCGUUUU-UCGCGCAAGCGAAUAUAAAAAAAAAAAAAGAAGCGAAA--AAAUCAGGA----------A-AAAAUCACAGGUAA .....(((((((((....)))))....(-((((....))))).........................--.........----------.-.....))))..... ( -21.90) >DroPse_CAF1 368573 93 + 1 CGACGUGUGGGCAGUCGUCUGCCGUUUUCUCGCGCUCCAAAAUAUCAAA--A---GGAAAAGCAAAA---AACAUGGUACCAUAAUAACAAAAACCA---GAAA ...(((((.(((((....)))))........((..(((...........--.---)))...))....---.))))).....................---.... ( -17.30) >DroSim_CAF1 237169 93 + 1 AGAAGUGUGGGCAGUUGGCUGCCGUUUU-UCGCGCAAGCGAAUAUAAAAAAAAAAAAAUGAGCGAAAAAAAAUCAAGA----------AAAAAAUUACAGGUAA .....(((((((((....)))))....(-((((....)))))....................................----------.......))))..... ( -19.90) >DroYak_CAF1 275621 88 + 1 AGAAGUGUGGGCAGUUGGCUGCCGUUUU-UCGCGCAAGCGAGUAUAAAA------AAA-AAACGAAA--AAAUCUGGAAAAAA------AAAAAUCACAGGUAA .....(((((((((....)))))(((((-((((....))))........------..)-))))....--..............------......))))..... ( -21.70) >DroPer_CAF1 388511 93 + 1 CGACGUGUGGGCAGUCGUCUGCCGUUUUCUCGCGCUCCAAAAUAUCAAA--A---GGAAAAGCAAAA---AACAUGGUACCAUAAUAACAAAAACCA---GUAA ...(((((.(((((....)))))........((..(((...........--.---)))...))....---.))))).....................---.... ( -17.30) >consensus AGAAGUGUGGGCAGUUGGCUGCCGUUUU_UCGCGCAAGCGAAUAUAAAA__A___AAAAAAGCGAAA__AAAUCUGGAA__A______AAAAAAUCACAGGUAA ....((((((((((....))))).......)))))..................................................................... (-12.17 = -12.17 + -0.00)
Location | 2,880,306 – 2,880,396 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 70.49 |
Mean single sequence MFE | -17.29 |
Consensus MFE | -8.63 |
Energy contribution | -8.23 |
Covariance contribution | -0.40 |
Combinations/Pair | 1.22 |
Mean z-score | -1.78 |
Structure conservation index | 0.50 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.797909 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2880306 90 - 22224390 UUACCUGUGAUUUU-U----------UCCUGAUUU--UUUCGCUUCUUUUUUUUUUUUUAUAUUCGCUUGCGCGA-AAAACGGCAGCCAACUGCCCACACUUCU .....((((.....-.----------.......((--((((((............................))))-)))).(((((....)))))))))..... ( -16.59) >DroPse_CAF1 368573 93 - 1 UUUC---UGGUUUUUGUUAUUAUGGUACCAUGUU---UUUUGCUUUUCC---U--UUUGAUAUUUUGGAGCGCGAGAAAACGGCAGACGACUGCCCACACGUCG ....---((((..(..(....)..).))))..((---((((((..((((---.--...........)))).))))))))..(((((....)))))......... ( -19.20) >DroSim_CAF1 237169 93 - 1 UUACCUGUAAUUUUUU----------UCUUGAUUUUUUUUCGCUCAUUUUUUUUUUUUUAUAUUCGCUUGCGCGA-AAAACGGCAGCCAACUGCCCACACUUCU .....(((........----------.........((((((((.((......................)).))))-)))).(((((....))))).)))..... ( -15.65) >DroYak_CAF1 275621 88 - 1 UUACCUGUGAUUUUU------UUUUUUCCAGAUUU--UUUCGUUU-UUU------UUUUAUACUCGCUUGCGCGA-AAAACGGCAGCCAACUGCCCACACUUCU .....((((......------..............--....((((-(..------........((((....))))-)))))(((((....)))))))))..... ( -15.80) >DroPer_CAF1 388511 93 - 1 UUAC---UGGUUUUUGUUAUUAUGGUACCAUGUU---UUUUGCUUUUCC---U--UUUGAUAUUUUGGAGCGCGAGAAAACGGCAGACGACUGCCCACACGUCG ....---((((..(..(....)..).))))..((---((((((..((((---.--...........)))).))))))))..(((((....)))))......... ( -19.20) >consensus UUACCUGUGAUUUUUG______U__UUCCAGAUUU__UUUCGCUUUUUU___U__UUUUAUAUUCGCUUGCGCGA_AAAACGGCAGCCAACUGCCCACACUUCU .......................................((((............................))))......(((((....)))))......... ( -8.63 = -8.23 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:50 2006