Locus 99

Sequence ID X_DroMel_CAF1
Location 388,006 – 388,107
Length 101
Max. P 0.664099
window131

overview

Window 1

Location 388,006 – 388,107
Length 101
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 69.58
Mean single sequence MFE -24.93
Consensus MFE -13.46
Energy contribution -13.13
Covariance contribution -0.33
Combinations/Pair 1.21
Mean z-score -1.64
Structure conservation index 0.54
SVM decision value 0.28
SVM RNA-class probability 0.664099
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 388006 101 + 22224390
AGCGAGUGGGUAUGACAGGACAG------AUAGCAGCGAGUACUCUCGUAGCUUUGCCUUAUUUUUCUUUUCUUCCUUUU-CCUUCAAUUCCCUU-------AUCCGCCCCCGCC
.(((.((((((((((.(((((((------..(((.(((((....))))).)))))).......................)-)))))).......)-------))))))...))). ( -21.61)
>DroSec_CAF1 21870 102 + 1
AGCGAGUGGGUACGAGAGGACAG------AUAACAGCGAGUUCUCUCGUAGCUUUGCCUUAUUUUUCAUUUCUUCUUUUCCCCUUCAAUUCCCUU-------CUCCGCCCCCGCC
.(((.(.((((((((((((((..------..........)))))))))).((...))......................................-------....)))))))). ( -23.30)
>DroYak_CAF1 22794 102 + 1
AGCGAGUGGGUACGACAGGACAGAUAUAGAUAGCAGCGAGUGCUCUCGUUGCUUUCCCUCC-UUUUCCUUCCAU----UCCC--------CCCCGCUACCCCCGCCCAUUCCACU
((((.(.(((...((.((((........((.(((((((((....))))))))).)).....-...))))))...----.)))--------.).)))).................. ( -29.89)
>consensus
AGCGAGUGGGUACGACAGGACAG______AUAGCAGCGAGUACUCUCGUAGCUUUGCCUUAUUUUUCAUUUCUUC_UUUCCCCUUCAAUUCCCUU_______CUCCGCCCCCGCC
.....(((((..(....).............(((.(((((....))))).)))........................................................))))). (-13.46 = -13.13 +  -0.33) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:16 2006