Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,855,299 – 2,855,390 |
Length | 91 |
Max. P | 0.978042 |
Location | 2,855,299 – 2,855,390 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 67.57 |
Mean single sequence MFE | -15.77 |
Consensus MFE | -12.50 |
Energy contribution | -13.17 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -0.96 |
Structure conservation index | 0.79 |
SVM decision value | 1.34 |
SVM RNA-class probability | 0.943757 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2855299 91 + 22224390 UGCCCGCCACCACUUCCCACACCCCCACUCCACUCCC-CCUUUAAUUGUGCGCCAUUUAAGCACCUGCUGUGCAGCCCCCCAUUUUGGGAGG ............(((((((..................-.........((((.........))))((((...))))..........))))))) ( -16.80) >DroSec_CAF1 242903 75 + 1 UGCCC----------------CCACCACUCCACUCCCCCCUUUAAUUGUGCGCCAUUUAAGCACCUGCUGUGCAGCCCC-CAUUUCGGGAGG .....----------------...........(((((..........((((.........))))((((...))))....-......))))). ( -16.30) >DroSim_CAF1 212799 71 + 1 NNNNN----------------NNNNNNNNNNNNNCCCCCCUU--AUUGUGCGCCAU-UAAGCACGUGCUGUGCAGCCCC-CAUUU-GGGAGG .....----------------..............(((((..--...((((.....-...))))..(((....)))...-.....-))).)) ( -14.20) >consensus UGCCC________________CC_CCACUCCACUCCCCCCUUUAAUUGUGCGCCAUUUAAGCACCUGCUGUGCAGCCCC_CAUUU_GGGAGG ................................(((((..........((((.........))))..(((....)))..........))))). (-12.50 = -13.17 + 0.67)
Location | 2,855,299 – 2,855,390 |
---|---|
Length | 91 |
Sequences | 3 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 67.57 |
Mean single sequence MFE | -21.91 |
Consensus MFE | -18.23 |
Energy contribution | -18.57 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -0.95 |
Structure conservation index | 0.83 |
SVM decision value | 1.80 |
SVM RNA-class probability | 0.978042 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2855299 91 - 22224390 CCUCCCAAAAUGGGGGGCUGCACAGCAGGUGCUUAAAUGGCGCACAAUUAAAGG-GGGAGUGGAGUGGGGGUGUGGGAAGUGGUGGCGGGCA ((((((.....))))))((((.((.((...(((.....)))((((..(((....-..........)))..))))......)).))))))... ( -23.94) >DroSec_CAF1 242903 75 - 1 CCUCCCGAAAUG-GGGGCUGCACAGCAGGUGCUUAAAUGGCGCACAAUUAAAGGGGGGAGUGGAGUGGUGG----------------GGGCA ((((((.((.((-....((((...))))(((((.....))))).)).))...)))))).............----------------..... ( -21.60) >DroSim_CAF1 212799 71 - 1 CCUCCC-AAAUG-GGGGCUGCACAGCACGUGCUUA-AUGGCGCACAAU--AAGGGGGGNNNNNNNNNNNNN----------------NNNNN ((((((-.....-...(((....)))..(((((..-..))))).....--..)))))).............----------------..... ( -20.20) >consensus CCUCCC_AAAUG_GGGGCUGCACAGCAGGUGCUUAAAUGGCGCACAAUUAAAGGGGGGAGUGGAGUGG_GG________________GGGCA ((((((..........(((....)))..(((((.....))))).........)))))).................................. (-18.23 = -18.57 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:42 2006