Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,851,408 – 2,851,511 |
Length | 103 |
Max. P | 0.546397 |
Location | 2,851,408 – 2,851,511 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 85.20 |
Mean single sequence MFE | -27.30 |
Consensus MFE | -18.48 |
Energy contribution | -19.92 |
Covariance contribution | 1.44 |
Combinations/Pair | 1.08 |
Mean z-score | -1.73 |
Structure conservation index | 0.68 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.546397 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2851408 103 + 22224390 CUGUUAACUCUGGGGCAUAAUAACUUUAUUAGGAAGUUCGUCUUGAACUUGCAGCA--GCCGCCGCAAUUGGGGGCAAAUUUAAGUGCCCCCACCCCCCCUCACC ...........((((..(((((....)))))((((((((.....))))))((.((.--...)).))...((((((((........)))))))))).))))..... ( -32.30) >DroSec_CAF1 239035 90 + 1 CUGUUAACUCUGGGGCAUAAUAACUUUAUUAGGAAGUUCGUCUUGAACUUGCAGCA--GCCGCCGCAAUUGGGGGCAAAUUUAAGUGACCCC------------- ...........(((((((.............(.((((((.....)))))).)....--(((.(((....))).)))........))).))))------------- ( -25.40) >DroEre_CAF1 259918 93 + 1 CUGUUAACUCUGGGGCAUAAUAACUUUAUUAGGAAGUUCGUCUUCAACUUGCAGCA--GCCGCCGCAAUUGGGGGCAAAUUUAAGUGCCCCCCUC---------- ...........(((((((...((((((.....)))))).((((((((.((((.((.--...)).))))))))))))........)))))))....---------- ( -31.40) >DroYak_CAF1 246874 89 + 1 CUGUUAACUCCG-GGCAUAAUAACUUUAUUAGGAAGUUCGUCUUGAAGUUGCAGCA--GCCGCCUCAAUUGAGGGCAAAUUUAAGUGCCCCC------------- ...........(-(((((..((((((((..(.(.....).)..)))))))).....--(((..(((....))))))........))))))..------------- ( -22.80) >DroAna_CAF1 385445 91 + 1 CUGUUAACU-UGGCGCUUAAUAACUUUAUUAGGAAGUUGGUCGUGA--UGGCAUCAUUGCCGCCGCAAUUGAGGGCAAAUUUAAGUGCUUCCAG----------- .........-.((((((((((((((((.....)))))))...(((.--(((((....))))).)))..............))))))))).....----------- ( -24.60) >consensus CUGUUAACUCUGGGGCAUAAUAACUUUAUUAGGAAGUUCGUCUUGAACUUGCAGCA__GCCGCCGCAAUUGGGGGCAAAUUUAAGUGCCCCC_____________ ...........(((((((...((((((.....)))))).(((((.((.((((.((......)).)))))).)))))........))))))).............. (-18.48 = -19.92 + 1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:40 2006