Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,849,903 – 2,850,033 |
Length | 130 |
Max. P | 0.968685 |
Location | 2,849,903 – 2,849,999 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 78.47 |
Mean single sequence MFE | -25.28 |
Consensus MFE | -15.96 |
Energy contribution | -16.52 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.08 |
Mean z-score | -1.89 |
Structure conservation index | 0.63 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878608 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2849903 96 + 22224390 ----AGAAAUAAAAUCAAAGUGUUACACGACAAUCCGUGCAGGUGUCAUUGAGACUUGCGAAUGAUUUGGCGCCAGUUGAUGGCGCCA-----ACAUAUAG-------ACAG ----.......((((((.........(((......)))((((((.((...)).))))))...))))))(((((((.....))))))).-----........-------.... ( -29.40) >DroGri_CAF1 351500 98 + 1 ----AAAAAUAAAUUCAAAGUGUUACACGAUAAUUCGUGCAGGUGUCAUUGAGACUUGCGAAUGAUUUGGCGCCAGUUUACGGAAUAA-----UAUGAUAGU---CAAAG-- ----........((((..........((((....))))((((((.((...)).))))))))))..((((((..((..(((.....)))-----..))...))---)))).-- ( -18.40) >DroEre_CAF1 258390 103 + 1 ----AGAAAUAAAAUCAAAGUGUUACACGACAAUCCGUGCAGGUGUCAUUGAGACUUGCGAAUGAUUUGGCGCCAGUUGAUGGCGCCA-----ACAUAUAGAGAAUAGAGAG ----.......((((((.........(((......)))((((((.((...)).))))))...))))))(((((((.....))))))).-----................... ( -29.40) >DroMoj_CAF1 424860 102 + 1 ----AAAAAUAAAUUCAAAGCGUUACACGACAAUUCGUGCAGGUGUCAUUGAGACUUGCGAAUGAUUUGGCGCCAGUUUAUGGCAUUAUACUAUAUGACAGA---CUUA--- ----..........(((((.((((.(((((....))))((((((.((...)).))))))))))).))))).((((.....))))..................---....--- ( -21.80) >DroAna_CAF1 383793 90 + 1 AAUAAGAAAUAAAAUCAAAGUGUUACACGACAAUUCGUGCAGGUGUCAUUGAGACUUGCGAAUGAUUUGGCGCCAGUUAAUGGCGCUA-----AG----------------- ...........((((((.........((((....))))((((((.((...)).))))))...))))))(((((((.....))))))).-----..----------------- ( -27.80) >DroPer_CAF1 349134 102 + 1 AAGAAGAAAUAAAACCAAAGUGUUACACGACAAUUC--GCAGGUGUCAUUGAGAGUUGCAAAUGAUUUGGCGCCAGUUUAUGGCCUCA-----ACUGACAGU---UGGAGGG ..............((....((((....))))..((--.(((.((((((((((....((.((....)).))((((.....))))))))-----).))))).)---)))))). ( -24.90) >consensus ____AGAAAUAAAAUCAAAGUGUUACACGACAAUUCGUGCAGGUGUCAUUGAGACUUGCGAAUGAUUUGGCGCCAGUUUAUGGCGCCA_____ACUGAUAG_______AG__ ..............(((((.((((..(((......)))((((((.((...)).)))))).)))).))))).((((.....))))............................ (-15.96 = -16.52 + 0.56)
Location | 2,849,903 – 2,849,999 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 78.47 |
Mean single sequence MFE | -21.87 |
Consensus MFE | -14.72 |
Energy contribution | -15.22 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.19 |
Mean z-score | -2.02 |
Structure conservation index | 0.67 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933821 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2849903 96 - 22224390 CUGU-------CUAUAUGU-----UGGCGCCAUCAACUGGCGCCAAAUCAUUCGCAAGUCUCAAUGACACCUGCACGGAUUGUCGUGUAACACUUUGAUUUUAUUUCU---- .(((-------..((...(-----((((((((.....)))))))))...))..))).(((.....)))...(((((((....)))))))...................---- ( -27.20) >DroGri_CAF1 351500 98 - 1 --CUUUG---ACUAUCAUA-----UUAUUCCGUAAACUGGCGCCAAAUCAUUCGCAAGUCUCAAUGACACCUGCACGAAUUAUCGUGUAACACUUUGAAUUUAUUUUU---- --.....---.........-----......(((......))).......((((....(((.....)))...(((((((....))))))).......))))........---- ( -12.80) >DroEre_CAF1 258390 103 - 1 CUCUCUAUUCUCUAUAUGU-----UGGCGCCAUCAACUGGCGCCAAAUCAUUCGCAAGUCUCAAUGACACCUGCACGGAUUGUCGUGUAACACUUUGAUUUUAUUUCU---- ..................(-----((((((((.....)))))))))((((.......(((.....)))...(((((((....)))))))......)))).........---- ( -27.00) >DroMoj_CAF1 424860 102 - 1 ---UAAG---UCUGUCAUAUAGUAUAAUGCCAUAAACUGGCGCCAAAUCAUUCGCAAGUCUCAAUGACACCUGCACGAAUUGUCGUGUAACGCUUUGAAUUUAUUUUU---- ---.(((---(.((((((..........((((.....))))...........(....).....))))))..(((((((....)))))))..)))).............---- ( -19.70) >DroAna_CAF1 383793 90 - 1 -----------------CU-----UAGCGCCAUUAACUGGCGCCAAAUCAUUCGCAAGUCUCAAUGACACCUGCACGAAUUGUCGUGUAACACUUUGAUUUUAUUUCUUAUU -----------------..-----..((((((.....)))))).((((((.......(((.....)))...(((((((....)))))))......))))))........... ( -23.90) >DroPer_CAF1 349134 102 - 1 CCCUCCA---ACUGUCAGU-----UGAGGCCAUAAACUGGCGCCAAAUCAUUUGCAACUCUCAAUGACACCUGC--GAAUUGUCGUGUAACACUUUGGUUUUAUUUCUUCUU ....(((---(.(((((.(-----((((((((.....))))((.((....)).))....))))))))))...((--((....))))........)))).............. ( -20.60) >consensus __CU_______CUAUCAGU_____UGACGCCAUAAACUGGCGCCAAAUCAUUCGCAAGUCUCAAUGACACCUGCACGAAUUGUCGUGUAACACUUUGAUUUUAUUUCU____ ...........................(((((.....)))))..((((((.......(((.....)))...(((((((....)))))))......))))))........... (-14.72 = -15.22 + 0.50)
Location | 2,849,935 – 2,850,033 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 80.78 |
Mean single sequence MFE | -29.35 |
Consensus MFE | -22.45 |
Energy contribution | -22.45 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.48 |
Structure conservation index | 0.76 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.546166 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2849935 98 + 22224390 GUGCAGGUGUCAUUGAGACUUGCGAAUGAUUUGGCGCC----AGUUGAUGGCGCCAACAUAUAG-------ACAGAUUCCAAGUGUCCCCCAGUCU-CCGAAAACCAAAA .....(((......((((((.....(((..((((((((----(.....))))))))))))...(-------(((.........))))....)))))-).....))).... ( -29.50) >DroSec_CAF1 237627 98 + 1 GUGCAGGUGUCAUUGAGACUUGCGAAUGAUUUGGCGCC----AAUUGAUGGCGCCAACAUAUAG-------AGAGAUUCCAAGUGUCCCCCAGUCAGUCGAAAACCGAA- ..((((((.((...)).))))))((.((((((((((((----(.....))))))))........-------.((.((.....)).))....))))).))..........- ( -29.10) >DroEre_CAF1 258422 98 + 1 GUGCAGGUGUCAUUGAGACUUGCGAAUGAUUUGGCGCC----AGUUGAUGGCGCCAACAUAUAGAGAAUAGAGAGAAUCCAAG--UCGCCAAGUCU-CC-AAAGCU---- .....(((......(((((((((((..(((((((((((----(.....)))))))....(((.....)))....)))))....--))).)))))))-).-...)))---- ( -31.90) >DroYak_CAF1 245484 90 + 1 GUGCAGGUGUCAUUGAGACUUGCGAAUGAUUUGGCGCCAGCCAGUUGAUGGCGCCAACAUAUAGC-----GAGAGAAUCCAAG--UCCCCAAGUCG-A------------ .(((((((.((...)).)))))))..(((((((((((((..(....).))))))).........(-----....)........--.....))))))-.------------ ( -26.90) >consensus GUGCAGGUGUCAUUGAGACUUGCGAAUGAUUUGGCGCC____AGUUGAUGGCGCCAACAUAUAG_______AGAGAAUCCAAG__UCCCCAAGUCU_CC_AAAACC____ .(((((((.((...)).))))))).(((..((((((((...........))))))))))).................................................. (-22.45 = -22.45 + -0.00)
Location | 2,849,935 – 2,850,033 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 80.78 |
Mean single sequence MFE | -30.88 |
Consensus MFE | -20.27 |
Energy contribution | -20.77 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.44 |
Structure conservation index | 0.66 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968685 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2849935 98 - 22224390 UUUUGGUUUUCGG-AGACUGGGGGACACUUGGAAUCUGU-------CUAUAUGUUGGCGCCAUCAACU----GGCGCCAAAUCAUUCGCAAGUCUCAAUGACACCUGCAC ....(((.((..(-(((((.(.(((((..((((.....)-------)))..))(((((((((.....)----))))))))....))).).))))))...)).)))..... ( -32.80) >DroSec_CAF1 237627 98 - 1 -UUCGGUUUUCGACUGACUGGGGGACACUUGGAAUCUCU-------CUAUAUGUUGGCGCCAUCAAUU----GGCGCCAAAUCAUUCGCAAGUCUCAAUGACACCUGCAC -.((((((...)))))).((.((((((..((((.....)-------)))..)))((((((((.....)----)))))))............(((.....))).))).)). ( -30.80) >DroEre_CAF1 258422 98 - 1 ----AGCUUU-GG-AGACUUGGCGA--CUUGGAUUCUCUCUAUUCUCUAUAUGUUGGCGCCAUCAACU----GGCGCCAAAUCAUUCGCAAGUCUCAAUGACACCUGCAC ----......-.(-(((((((.(((--..((((.....))))...........(((((((((.....)----)))))))).....))))))))))).............. ( -32.50) >DroYak_CAF1 245484 90 - 1 ------------U-CGACUUGGGGA--CUUGGAUUCUCUC-----GCUAUAUGUUGGCGCCAUCAACUGGCUGGCGCCAAAUCAUUCGCAAGUCUCAAUGACACCUGCAC ------------.-.......((((--((((((.....))-----........(((((((((((....)).)))))))))........)))))))).............. ( -27.40) >consensus ____GGUUUU_GG_AGACUGGGGGA__CUUGGAAUCUCU_______CUAUAUGUUGGCGCCAUCAACU____GGCGCCAAAUCAUUCGCAAGUCUCAAUGACACCUGCAC .................(((((.....))))).....................((((((((...........)))))))).......(((.(((.....)))...))).. (-20.27 = -20.77 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:39 2006