Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,840,278 – 2,840,383 |
Length | 105 |
Max. P | 0.974454 |
Location | 2,840,278 – 2,840,383 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 85.21 |
Mean single sequence MFE | -29.52 |
Consensus MFE | -21.45 |
Energy contribution | -21.57 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.04 |
Mean z-score | -2.76 |
Structure conservation index | 0.73 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974454 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2840278 105 + 22224390 UGUUUCUGCAGC--AGAAGGAGCAGCGCAACAGCAACACAUCUGCAGCACAGCUGCUCCUCAGAGUUCGUCAGAGGUCAGACUGCGAAAAAGAUGUGAAAAAAAAGA- ..((((.(((((--.((.((((((((......(((.......)))......)))))))))).((.(((....))).)).).))))))))..................- ( -32.00) >DroSec_CAF1 228202 98 + 1 UGUUUCUGCAGU--AGAAGCAGC-----AACAGCAACACAUCUGCAGCACAGCUGCUCCUCAGAGUUCGUCGGAGGUCAGACUGCUAAAAAGAUGUGAAAAAAAA--- ((((.((((...--....)))).-----))))....(((((((..((((...(((..((((.((.....)).)))).)))..))))....)))))))........--- ( -30.90) >DroSim_CAF1 201092 98 + 1 UGUUUCUGCAGC--AGAAGCAGC-----AUCAGCAACACAUCUGCAGCACAGCUGCUCCUCAGAGUUCGUCGGAGGUCAGACUGCGAAAAAGAUGUGAAAAAAAA--- ((((((((...)--)))))))((-----....))..(((((((....(.((((((..((((.((.....)).)))).))).))).)....)))))))........--- ( -32.80) >DroEre_CAF1 248477 92 + 1 UGUUUCUGCAGCAA----------------CAGCAAGACAUCUGCAGCACAGCUGCUCCACAGAGUUCGUCAGAGGUCAGACUGCGAAAAAGAUGUUGAAAAAAAAAA ..(((((((.....----------------..))).((((((((((((...))))).........((((.(((........)))))))..)))))))))))....... ( -22.40) >consensus UGUUUCUGCAGC__AGAAGCAGC_____AACAGCAACACAUCUGCAGCACAGCUGCUCCUCAGAGUUCGUCAGAGGUCAGACUGCGAAAAAGAUGUGAAAAAAAA___ (((....)))..........................(((((((....(.((((((..((((.((.....)).)))).))).))).)....)))))))........... (-21.45 = -21.57 + 0.12)
Location | 2,840,278 – 2,840,383 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 85.21 |
Mean single sequence MFE | -28.88 |
Consensus MFE | -22.30 |
Energy contribution | -23.05 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.98 |
Structure conservation index | 0.77 |
SVM decision value | 0.86 |
SVM RNA-class probability | 0.868964 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2840278 105 - 22224390 -UCUUUUUUUUCACAUCUUUUUCGCAGUCUGACCUCUGACGAACUCUGAGGAGCAGCUGUGCUGCAGAUGUGUUGCUGUUGCGCUGCUCCUUCU--GCUGCAGAAACA -..........(((((((.(..(((((.(((.((((.((.....)).))))..))))))))..).))))))).....(((...((((..(....--)..)))).))). ( -31.90) >DroSec_CAF1 228202 98 - 1 ---UUUUUUUUCACAUCUUUUUAGCAGUCUGACCUCCGACGAACUCUGAGGAGCAGCUGUGCUGCAGAUGUGUUGCUGUU-----GCUGCUUCU--ACUGCAGAAACA ---........(((((((.....((((.(((.((((.((.....)).))))..))))))).....))))))).....(((-----.((((....--...)))).))). ( -30.60) >DroSim_CAF1 201092 98 - 1 ---UUUUUUUUCACAUCUUUUUCGCAGUCUGACCUCCGACGAACUCUGAGGAGCAGCUGUGCUGCAGAUGUGUUGCUGAU-----GCUGCUUCU--GCUGCAGAAACA ---........(((((((.(..(((((.(((.((((.((.....)).))))..))))))))..).))))))).......(-----((.((....--)).)))...... ( -30.10) >DroEre_CAF1 248477 92 - 1 UUUUUUUUUUCAACAUCUUUUUCGCAGUCUGACCUCUGACGAACUCUGUGGAGCAGCUGUGCUGCAGAUGUCUUGCUG----------------UUGCUGCAGAAACA ....................(((((((........))).)))).((((..(((((((...((.......))...))))----------------)).)..)))).... ( -22.90) >consensus ___UUUUUUUUCACAUCUUUUUCGCAGUCUGACCUCCGACGAACUCUGAGGAGCAGCUGUGCUGCAGAUGUGUUGCUGUU_____GCUGCUUCU__GCUGCAGAAACA ...........(((((((....(((((.(((.((((.((.....)).))))..))))))))....)))))))((((.......................))))..... (-22.30 = -23.05 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:35 2006