Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,828,551 – 2,828,709 |
Length | 158 |
Max. P | 0.928196 |
Location | 2,828,551 – 2,828,669 |
---|---|
Length | 118 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.80 |
Mean single sequence MFE | -23.50 |
Consensus MFE | -15.31 |
Energy contribution | -15.25 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.13 |
Mean z-score | -2.01 |
Structure conservation index | 0.65 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838525 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2828551 118 - 22224390 AUAGGCAAUGUAUAUUAAAUGUGCGCUUUGGUGUAAUUCUUUAAUGCGUAUAUUUAUUUAUAACAUUCGAAUGGUAUACCUAUUUCAAUGGUUUAUUUCUGACAUUUAUGGAUUAA--UU ((((((..((((...(((((((((((.((((.(.....).)))).)))))))))))..)))).((((.((((((.....)))))).))))))))))....................--.. ( -22.70) >DroSec_CAF1 216783 118 - 1 AUAGCGAAUGUAUAUUAGAUGUGCGCUUUGGUGUAAUUCUUAAAUGCGCAUAUUUAUUUAUAACAUUUGAAUUGUAUGCCUAUUUCAAUGGUUUAUUUCUGACAUUUAUGGAUUAA--UU ....((((((((((.((((((((((((((((........))))).)))))))))))..))).)))))))....(((.(((.........))).)))....................--.. ( -24.00) >DroSim_CAF1 189362 101 - 1 AUAGCCAAUGUAUAUUAAAUGUGCGCUUUGGUGUAAUUCUUAAAUGCGCAUAUUUAUUUAUAACAU-----------------UUCAAUGGUUUAUUUCUGACAUUUAUGGAUUAA--UU ..((((((((((((.((((((((((((((((........))))).)))))))))))..))).))))-----------------.....))))).......................--.. ( -20.10) >DroEre_CAF1 236525 109 - 1 AUAGGCAAUGUAUAUUAAAUGUGCGCUUUGCCGUUAUUCUUAAAUGCGCAUGUUUAUUUAUAACAU-----------ACUUAUACUUAUGUUUUAUGUGUGUCGUUUACGGAUUAACAUA ...((((((((((((...)))))))..)))))((((.((((((((((((((((........(((((-----------(........))))))..))))))).)))))).))).))))... ( -27.20) >consensus AUAGCCAAUGUAUAUUAAAUGUGCGCUUUGGUGUAAUUCUUAAAUGCGCAUAUUUAUUUAUAACAU___________ACCUAUUUCAAUGGUUUAUUUCUGACAUUUAUGGAUUAA__UU .......(((((((.((((((((((((((((........))))).)))))))))))..))).))))...................................................... (-15.31 = -15.25 + -0.06)
Location | 2,828,589 – 2,828,709 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 86.46 |
Mean single sequence MFE | -23.03 |
Consensus MFE | -17.61 |
Energy contribution | -17.18 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.17 |
Mean z-score | -2.27 |
Structure conservation index | 0.76 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928196 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2828589 120 - 22224390 UAAUGAGUAUAACAUUCAACUUCAAGUUUUAAUCUACAUAAUAGGCAAUGUAUAUUAAAUGUGCGCUUUGGUGUAAUUCUUUAAUGCGUAUAUUUAUUUAUAACAUUCGAAUGGUAUACC ......(((((.(((((........((........)).......(.((((((((.(((((((((((.((((.(.....).)))).)))))))))))..))).))))))))))).))))). ( -24.80) >DroSec_CAF1 216821 120 - 1 UAAUGAGUAUAACAUUCAACUUCAAGUUUUAAUCUACAUAAUAGCGAAUGUAUAUUAGAUGUGCGCUUUGGUGUAAUUCUUAAAUGCGCAUAUUUAUUUAUAACAUUUGAAUUGUAUGCC ...(((((.....)))))..................((((....((((((((((.((((((((((((((((........))))).)))))))))))..))).))))))).....)))).. ( -26.30) >DroSim_CAF1 189397 106 - 1 UAAUGAGUAUAACAUUCAACUUCAAGUUAUAAUCUACAUAAUAGCCAAUGUAUAUUAAAUGUGCGCUUUGGUGUAAUUCUUAAAUGCGCAUAUUUAUUUAUAACAU-------------- ...(((((.....))))).......(((((((..(((((........)))))...((((((((((((((((........))))).))))))))))).)))))))..-------------- ( -23.40) >DroEre_CAF1 236565 109 - 1 UAAUAAAUAUAACAUUCAACUUCAAGUUUUAAUCUACAUAAUAGGCAAUGUAUAUUAAAUGUGCGCUUUGCCGUUAUUCUUAAAUGCGCAUGUUUAUUUAUAACAU-----------ACU ..(((((((.(((..............((((((.(((((........))))).)))))).((((((...................)))))))))))))))).....-----------... ( -17.61) >consensus UAAUGAGUAUAACAUUCAACUUCAAGUUUUAAUCUACAUAAUAGCCAAUGUAUAUUAAAUGUGCGCUUUGGUGUAAUUCUUAAAUGCGCAUAUUUAUUUAUAACAU___________ACC ..(((((((....................((((.(((((........))))).))))((((((((((((((........))))).))))))))))))))))................... (-17.61 = -17.18 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:33 2006