Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,825,694 – 2,825,793 |
Length | 99 |
Max. P | 0.519882 |
Location | 2,825,694 – 2,825,793 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 77.37 |
Mean single sequence MFE | -17.88 |
Consensus MFE | -11.35 |
Energy contribution | -11.35 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.24 |
Structure conservation index | 0.63 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519882 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2825694 99 - 22224390 ACAAUAUCCUUUUCGUGUUAUUACAAGUGUACGUCCUUGUCGCCAGCUUUGUCAGA-AUGUCUGGCAACGCUACUUGUGCAC-A-UUUC-CAUCCC-GCCCUUC------- ..............((((....(((((((((((....))).)).(((.(((((((.-....))))))).)))))))))))))-.-....-......-.......------- ( -21.70) >DroVir_CAF1 316499 97 - 1 ACAAUAUCCUUUUUAUGUUAUUACAAGUGUACGUCCUUGUCGCCAGCUUUGUCAAA-AUGUCUGGCAACGCUUCAG-------U-GUUUUUUUUUU-UGUAUAUUUU---- ........................(((((((((........(((((((((....))-).).)))))(((((....)-------)-)))........-))))))))).---- ( -17.20) >DroEre_CAF1 233773 99 - 1 ACAAUAUCCUUUUCGUGUUAUUACAAGUGUACGUCCUUGUCGCCAGCUUUGUCAGA-AUGUCUGGCAACGCUACUUGUGCAC-A--UUU-CCUCCCCCGAAACU------- ..........((((((((....))).(((((((.....((....(((.(((((((.-....))))))).))))).)))))))-.--...-.......)))))..------- ( -22.80) >DroWil_CAF1 330043 97 - 1 ACAAUAUCCUUUUUAUGUUAUUACAAGUGUAUGUCCUUGUCGCCAGCUUUGUCAAA-AUGUCUGGCAACGCUUCU---GUACAA-UUUU-UUUCCC-ACCACUC------- ...............(((....)))..(((((.....(((.(((((((((....))-).).))))).))).....---))))).-....-......-.......------- ( -12.60) >DroMoj_CAF1 384915 108 - 1 ACAAUAUCCUUUUUAUGUUAUUACAAGUGUACGUCCUUGUCGCCAGCUUUGUCAAA-AUGUCUGGCAACGCUUCUGCUACGCUU-CUUUUCUUCCU-UGUUUUUUUUUUUC ........................(((((((.......((.(((((((((....))-).).))))).))((....)))))))))-...........-.............. ( -16.30) >DroAna_CAF1 346979 89 - 1 ACAAUAUCCUUUUCGUGUUAUUACAAGUGUACGUCCUUGUCGCCAGCUUUGUCAGAAAUGUCUGGCAACGCUUC---UGCUC-AGUCUC-CCUC----------------- ......................(((((........))))).((.(((.((((((((....)))))))).)))..---.))..-......-....----------------- ( -16.70) >consensus ACAAUAUCCUUUUCAUGUUAUUACAAGUGUACGUCCUUGUCGCCAGCUUUGUCAAA_AUGUCUGGCAACGCUUCU__UGCAC_A_UUUU_CUUCCC_UGCAUUU_______ ......................(((((........)))))....(((.((((((........)))))).)))....................................... (-11.35 = -11.35 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:31 2006