Locus 978

Sequence ID X_DroMel_CAF1
Location 2,821,354 – 2,821,452
Length 98
Max. P 0.987969
window1581

overview

Window 1

Location 2,821,354 – 2,821,452
Length 98
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 99.18
Mean single sequence MFE -26.62
Consensus MFE -25.94
Energy contribution -26.14
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.87
Structure conservation index 0.97
SVM decision value 2.10
SVM RNA-class probability 0.987969
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2821354 98 - 22224390
AUAUACCGCCCACACACCCACUCGUGUAACGGUCGACCACAAGGCAAUCAAAUGGAAAAGCCAGCGAAAGAAAAACUGACAGCGACGAGUGGGUCGUC
.............((((((((((((((....((((.......(((..((.....))...)))..(....)......)))).)).)))))))))).)). ( -27.00)
>DroSec_CAF1 209695 98 - 1
AUAUACCGCCCACACACCCACUCGUGUAACGGUCGACCACAAGGCAAUCAAAUGGAAAAGCCAGCGAAAGAAAAACUGACAGCGACGAGUGGGUCGUC
.............((((((((((((((....((((.......(((..((.....))...)))..(....)......)))).)).)))))))))).)). ( -27.00)
>DroSim_CAF1 181590 98 - 1
AUAUACCGCCCACACACCCACUCGUGUAACGGUCGACCACAAGGCAAUCAAAUGGAAAAGCCAGCGAAAGAAAAACUGACAGCGACGAGUGGGUCGUC
.............((((((((((((((....((((.......(((..((.....))...)))..(....)......)))).)).)))))))))).)). ( -27.00)
>DroEre_CAF1 229336 98 - 1
AUAUGCCGCCCACACUCCCACUCGUGUAACGGUCGACCACAAGGCAAUCAAAUGGAAAAGCCAGCGAAAGAAAAACUGACAGCGACGAGUGGGUCGUC
................(((((((((((....((((.......(((..((.....))...)))..(....)......)))).)).)))))))))..... ( -25.10)
>DroYak_CAF1 216398 98 - 1
AUAUACCGCCCACACACCCACUCGUGUAACGGUCGACCACAAGGCAAUCAAAUGGAAAAGCCAGCGAAAGAAAAACUGACAGCGACGAGUGGGUCGUC
.............((((((((((((((....((((.......(((..((.....))...)))..(....)......)))).)).)))))))))).)). ( -27.00)
>consensus
AUAUACCGCCCACACACCCACUCGUGUAACGGUCGACCACAAGGCAAUCAAAUGGAAAAGCCAGCGAAAGAAAAACUGACAGCGACGAGUGGGUCGUC
.............((((((((((((((....((((.......(((..((.....))...)))..(....)......)))).)).)))))))))).)). (-25.94 = -26.14 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:30 2006