Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,812,703 – 2,812,794 |
Length | 91 |
Max. P | 0.802683 |
Location | 2,812,703 – 2,812,794 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 78.22 |
Mean single sequence MFE | -31.30 |
Consensus MFE | -17.75 |
Energy contribution | -17.26 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.21 |
Mean z-score | -1.93 |
Structure conservation index | 0.57 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.802683 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2812703 91 - 22224390 AUU---UUUUGAAUG-GGCUUUUGUGCCGGACAUGGC--UCGACACUGACGGGCUAAUUCAUGCCCGGACAUAAAGGCG---CCCAUCAUUCGGGUUUCC--- ...---........(-((((((((((((((.((((((--(((.......))))).....)))).)))).)))))))))(---(((.......))))..))--- ( -32.90) >DroPse_CAF1 278099 97 - 1 AUGGCACACUGAAUGGGGCUUUUGUGUUGGACAUGGACAUGGACACUGACGGGCUAAUUCAUGCUCAAGCAUAAAGGCGAAGGCCAUCAG--G-CCAUCC--- (((((...((((.(((.((((((((((((..(((....)))..)......((((........)))).))))))))))).....)))))))--)-))))..--- ( -31.50) >DroSim_CAF1 173197 89 - 1 AUU---UUUUGAAUG-GGCUUUUGUGCCGGACAUGGC--UCGACACUGACGGGCUAAUUCAUGCCCGGACAUAAAGGCG---CCCAUCAU--GGGCUUCC--- ...---........(-((((((((((((((.((((((--(((.......))))).....)))).)))).)))))))))(---(((.....--))))..))--- ( -36.00) >DroYak_CAF1 207721 92 - 1 AUU---UUUUGAAUG-GGCUUUUGUGCCGGACAUGGC--UCGACACUGACGGGCUAAUUCAUGCCCGGACAUAAAGGCG---CCCAUCAU--GGCUUUCCCAC ...---.......((-((((((((((((((.((((((--(((.......))))).....)))).)))).)))))))))(---((......--)))....))). ( -34.50) >DroAna_CAF1 332598 88 - 1 AUU---UUUUGAAUG-GACUUUUGUGCCGGACACGGC--AUGACACUGACGGGCUAAUUCAGGCUUCGACAUAAAGGCA--GGCUAGCUG--GAGUUU----- ...---........(-((((.(..(((((....))))--)..)......(.(((((...(..((((........)))).--.).))))).--))))))----- ( -21.40) >DroPer_CAF1 299596 96 - 1 AUGGCACACUGAAUGGGGCUUUUGUGUUGGACAUGGACAUGGACACUGACGGGCUAAUUCAUGCUCAAGCAUAAAGGCGAAGGCCAUCAG--G-CCAUC---- (((((...((((.(((.((((((((((((..(((....)))..)......((((........)))).))))))))))).....)))))))--)-)))).---- ( -31.50) >consensus AUU___UUUUGAAUG_GGCUUUUGUGCCGGACAUGGC__UCGACACUGACGGGCUAAUUCAUGCCCGGACAUAAAGGCG___CCCAUCAG__GGCCUUCC___ .................(((((((((((((.(((((.......(......).......))))).)))).)))))))))......................... (-17.75 = -17.26 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:27 2006