Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,811,501 – 2,811,593 |
Length | 92 |
Max. P | 0.994357 |
Location | 2,811,501 – 2,811,593 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 72.97 |
Mean single sequence MFE | -19.98 |
Consensus MFE | -12.94 |
Energy contribution | -12.82 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.19 |
Mean z-score | -2.24 |
Structure conservation index | 0.65 |
SVM decision value | 2.47 |
SVM RNA-class probability | 0.994357 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2811501 92 - 22224390 CCGAAUAUAUCAGAAUAAAAUACAACA--------------UA--------------ACGUAAAUUGUUGACAUUUGUGAAUUUCCAUAAGUCAAUAAUAUAGCUUUGGGCAUCACACUU (((((...............(((....--------------..--------------..))).(((((((((..(((((......)))))))))))))).....)))))........... ( -14.50) >DroSec_CAF1 200000 98 - 1 CCGAAA-AAUCAAAAUAAAAUACAACA--------------UAUAUUUGU-------ACGUAAGUUGUUGACAUUUGUGAAUUUCCAUAAAUCAACAAUAUAGCUUUGGGCAUCACUCUU (((((.-.............(((((..--------------.....))))-------).....((((((((..((((((......)))))))))))))).....)))))........... ( -16.20) >DroSim_CAF1 171997 74 - 1 CCGAAA-AAUCAAAAUAAA---------------------------------------------UUGUUGACAUUUGUGAAUUUCCAUAAGUCAACAAUAUAGCUUUGGGCAUCACUCUU ..((..-..(((((.((.(---------------------------------------------((((((((..(((((......)))))))))))))).))..)))))...))...... ( -16.40) >DroEre_CAF1 219213 119 - 1 CCGAAA-AUGGAAAGUAAAAUACAACAUAUGUACGUGUGUGUAUAUUUAUACACCGAACGUAAAUUGUUGACAUUUGUGAAUUUCCAUAAGUCAACAGUGUAGCUUUGGGCAGCACACUU ..((..-(((((((...((((.((((((((((.((.(((((((....))))))))).)))))...)))))..)))).....)))))))...))....((((.((.....)).)))).... ( -33.00) >DroYak_CAF1 206433 105 - 1 CCGAAA-AUUAAAAGUAAAACACAAC--------------GUAUAUUUAUACAGCCAACGUAAAUUGUUGACAUUUGUGAAUUUCCAUAAGUCAACAGUAUAGCUUUGGGCAUCACACUC ..((..-...................--------------((((....)))).(((...((..(((((((((..(((((......))))))))))))))...))....))).))...... ( -19.80) >consensus CCGAAA_AAUCAAAAUAAAAUACAACA______________UAUAUUU_U_______ACGUAAAUUGUUGACAUUUGUGAAUUUCCAUAAGUCAACAAUAUAGCUUUGGGCAUCACACUU ...............................................................(((((((((..(((((......))))))))))))))...((.....))......... (-12.94 = -12.82 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:26 2006