Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,802,678 – 2,802,782 |
Length | 104 |
Max. P | 0.826596 |
Location | 2,802,678 – 2,802,782 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 86.18 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -23.25 |
Energy contribution | -24.00 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.18 |
Mean z-score | -1.87 |
Structure conservation index | 0.78 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826596 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2802678 104 - 22224390 --UU--ACCGCGCAAAGAUAAAGUAAGAAUGCAGUUUUGUUAUUCUUGAAGGGCUUUAUUUAUCGUUUAUCCUGCCGCAGGAAGUGUGGCAGUAGCAAGUUAGGCUAC --..--.((((((..(((((((((((((((((......).))))))).....)))))))))........(((((...))))).))))))..(((((.......))))) ( -28.50) >DroSec_CAF1 191128 106 - 1 --UUCACCCACGCAAAGAUAAAGUGAGAAAGCAGUUUUGGUACUCUUGAAGGGCUUUAUUUAUGGUUUAUCCUGCCGCAGGAAGUGUGGCAGUAGCAAGUUAGGCUAC --.....((((((..(((((((((....(((.(((......)))))).....)))))))))........(((((...))))).))))))..(((((.......))))) ( -28.30) >DroEre_CAF1 207534 108 - 1 CAAUCGCCCACACAAAGAUAAAGUAAGGAAGCAGUUUAAGUACUCUUGAAUGGCUUUAUUUAUGUUUUAUCCUGUCGCAGGAAGUGCGGCAGUAGCAAGUUAAGCUAC .....((((((..(((.(((((.....(((((.(((((((....))))))).))))).))))).)))..(((((...))))).))).))).(((((.......))))) ( -32.60) >DroYak_CAF1 197456 106 - 1 -AAUCAGCCACACAAAAAUAAAAUAAG-UAGCAGUUGAAGUACUCUUGAAUGGCUUUAUUUAUGGUUUAUCCUGUCGCAGGAAGUGCGGCAGUAGCAAGUUAGGCUAC -.....(((.(((..((((...(((((-((((.(((.(((....))).))).)))..)))))).)))).(((((...))))).))).))).(((((.......))))) ( -29.40) >consensus __AUCACCCACACAAAGAUAAAGUAAGAAAGCAGUUUAAGUACUCUUGAAGGGCUUUAUUUAUGGUUUAUCCUGCCGCAGGAAGUGCGGCAGUAGCAAGUUAGGCUAC ................((((((((((((((((..((((((....))))))..))))).)))))..))))))((((((((.....))))))))((((.......)))). (-23.25 = -24.00 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:24 2006