Locus 973

Sequence ID X_DroMel_CAF1
Location 2,802,678 – 2,802,782
Length 104
Max. P 0.826596
window1575

overview

Window 5

Location 2,802,678 – 2,802,782
Length 104
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 86.18
Mean single sequence MFE -29.70
Consensus MFE -23.25
Energy contribution -24.00
Covariance contribution 0.75
Combinations/Pair 1.18
Mean z-score -1.87
Structure conservation index 0.78
SVM decision value 0.70
SVM RNA-class probability 0.826596
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2802678 104 - 22224390
--UU--ACCGCGCAAAGAUAAAGUAAGAAUGCAGUUUUGUUAUUCUUGAAGGGCUUUAUUUAUCGUUUAUCCUGCCGCAGGAAGUGUGGCAGUAGCAAGUUAGGCUAC
--..--.((((((..(((((((((((((((((......).))))))).....)))))))))........(((((...))))).))))))..(((((.......))))) ( -28.50)
>DroSec_CAF1 191128 106 - 1
--UUCACCCACGCAAAGAUAAAGUGAGAAAGCAGUUUUGGUACUCUUGAAGGGCUUUAUUUAUGGUUUAUCCUGCCGCAGGAAGUGUGGCAGUAGCAAGUUAGGCUAC
--.....((((((..(((((((((....(((.(((......)))))).....)))))))))........(((((...))))).))))))..(((((.......))))) ( -28.30)
>DroEre_CAF1 207534 108 - 1
CAAUCGCCCACACAAAGAUAAAGUAAGGAAGCAGUUUAAGUACUCUUGAAUGGCUUUAUUUAUGUUUUAUCCUGUCGCAGGAAGUGCGGCAGUAGCAAGUUAAGCUAC
.....((((((..(((.(((((.....(((((.(((((((....))))))).))))).))))).)))..(((((...))))).))).))).(((((.......))))) ( -32.60)
>DroYak_CAF1 197456 106 - 1
-AAUCAGCCACACAAAAAUAAAAUAAG-UAGCAGUUGAAGUACUCUUGAAUGGCUUUAUUUAUGGUUUAUCCUGUCGCAGGAAGUGCGGCAGUAGCAAGUUAGGCUAC
-.....(((.(((..((((...(((((-((((.(((.(((....))).))).)))..)))))).)))).(((((...))))).))).))).(((((.......))))) ( -29.40)
>consensus
__AUCACCCACACAAAGAUAAAGUAAGAAAGCAGUUUAAGUACUCUUGAAGGGCUUUAUUUAUGGUUUAUCCUGCCGCAGGAAGUGCGGCAGUAGCAAGUUAGGCUAC
................((((((((((((((((..((((((....))))))..))))).)))))..))))))((((((((.....))))))))((((.......)))). (-23.25 = -24.00 +   0.75) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:24 2006