Locus 972

Sequence ID X_DroMel_CAF1
Location 2,792,457 – 2,792,551
Length 94
Max. P 0.589136
window1574

overview

Window 4

Location 2,792,457 – 2,792,551
Length 94
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 92.27
Mean single sequence MFE -30.07
Consensus MFE -24.09
Energy contribution -24.59
Covariance contribution 0.50
Combinations/Pair 1.10
Mean z-score -1.62
Structure conservation index 0.80
SVM decision value 0.11
SVM RNA-class probability 0.589136
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 2792457 94 - 22224390
GCCAGCCAAGAGGCUUCUUAUGCGUGGAAAUGGCCAAUUGUACAGGUGAA-AGACUGAA-----GGUUGGCCAAUAUUUCACAUGCGAGCCCUCUGUAAU
........((((((((.....((((((((((((((((((...(((.....-...)))..-----)))))))))...)))).)))))))).)))))..... ( -32.80)
>DroSec_CAF1 180298 94 - 1
GCCAGCCAAGAGGCUUCUUGUGCGGGGAAAUGGCCAAUUCUACAGGUGAA-AGACUGAA-----GGUUGGCUAAUAUUUCACAUGCGAGCCCUCUGUAAU
........(((((.(((.((((.(..(.(.((((((((..(.(((.....-...)))).-----.)))))))).).)..).)))).))).)))))..... ( -28.90)
>DroSim_CAF1 155532 94 - 1
GCCAGCCAAGAGGCUUCUUGUGCGGGGAAAUGGCCAAUUCUACAGGUGAA-AGACUGAA-----GGUUGGCCAAUAUUUCACAUGCGAGCCCUCUGUAAU
........(((((.(((.((((.(..(.(.((((((((..(.(((.....-...)))).-----.)))))))).).)..).)))).))).)))))..... ( -31.20)
>DroEre_CAF1 197447 100 - 1
GCCAGCCAAGUGGUUUCUUGUCCGGGGAAAUGGCCAAUUCUACAGGUGAAAAGACUGAAAGGUUGGUUGGCCAAUAAUUCACUUGCGAGCCCUCUGUAAU
((..((.((((((((((((....)))))).((((((((((.......))...((((....)))).)))))))).....))))))))..)).......... ( -27.40)
>consensus
GCCAGCCAAGAGGCUUCUUGUGCGGGGAAAUGGCCAAUUCUACAGGUGAA_AGACUGAA_____GGUUGGCCAAUAUUUCACAUGCGAGCCCUCUGUAAU
..(((...((.(((((.....((((((((((((((((((.....(((......)))........)))))))))...)))).))))))))))))))).... (-24.09 = -24.59 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:23 2006