Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,779,237 – 2,779,327 |
Length | 90 |
Max. P | 0.852739 |
Location | 2,779,237 – 2,779,327 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 77.19 |
Mean single sequence MFE | -37.65 |
Consensus MFE | -21.14 |
Energy contribution | -22.67 |
Covariance contribution | 1.53 |
Combinations/Pair | 1.26 |
Mean z-score | -1.95 |
Structure conservation index | 0.56 |
SVM decision value | 0.80 |
SVM RNA-class probability | 0.852739 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2779237 90 + 22224390 GCAGUGCCACCGCCACCGCUGGGAAUGGACAGUCGGCCAAUGCGAAUUCGAACGCGAAUGCGGGCGGAGGUGUAGGUGGUGCGGGCGCAG ...(((((..(((((((((((........)))).......((((..((((..(((....)))..))))..)))))))))))..))))).. ( -42.20) >DroGri_CAF1 246769 90 + 1 GCAGUGCCAGCGCGACCAGCACCAAUGGACAGUCGGCAAAUGCGAAUGCCAAUGCCAGCGCCGGUGGAAACUCUAACGGUGCAGACGCAG ((.((.((((.((.....)).)...))))).(((((((...((....))...)))).((((((.(((.....))).)))))).))))).. ( -31.50) >DroSec_CAF1 167362 90 + 1 GCAGUGCCACCGCCACCGCCGGCAAUGGACAGUCGGCCAAUGCGAAUGCGAACGCGAAUGCGGGCGGAGGACCAGGUGGUGCGGGCGCAG ...(((((..(((((((((((((........))))))...((....(.((..(((....)))..)).)....)))))))))..))))).. ( -42.70) >DroEre_CAF1 184420 90 + 1 GCAGCGCCACCGCCACCGCCCAGAAUGGACAGUCGGCCAAUGCGAAUGCGAACGCGAAUGCGGGCGGAGGAGCAGGUGGUGCGGGUGCAG (((((((((((.((.((((((....(((........)))..(((..(((....)))..))))))))).))....))))))))...))).. ( -43.20) >DroWil_CAF1 265600 77 + 1 GCAGCGCAACUGCCACAAGCGAAAAUGGCCAAUCGGCUAAUGCCAAUGCCAAUGCCAAUGCGGGUGG---UGCUGGUGGU---------- .((((((..((((.....(((....((((..((.(((....))).)))))).)))....))))...)---))))).....---------- ( -25.60) >DroYak_CAF1 178630 90 + 1 GCAGCGCCACUGCCACCGCCCAGAAUGGACAAUCGGCCAAUGCGAAUGCGAACGCGAAUGCGGGCGGAGGACCAGGUGGUGCGGGAGCAG ((.((((((((.((.((((((....(((........)))..(((..(((....)))..))))))))).))....))))))))....)).. ( -40.70) >consensus GCAGCGCCACCGCCACCGCCGAGAAUGGACAGUCGGCCAAUGCGAAUGCGAACGCGAAUGCGGGCGGAGGAGCAGGUGGUGCGGGCGCAG ...((((((((.((.(((((.....(((........)))..(((...((....))...))).))))).))....))))))))........ (-21.14 = -22.67 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:22 2006