| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,775,861 – 2,775,960 |
| Length | 99 |
| Max. P | 0.976615 |
| Location | 2,775,861 – 2,775,960 |
|---|---|
| Length | 99 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 78.81 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -18.47 |
| Energy contribution | -18.52 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.67 |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.976615 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2775861 99 + 22224390 UCAAGUCGGGCGUUAAUUAUUGAUUAGUUUAAAGCCCGAUUAACAAACCGGCAACGGGCUUAGAACGAAACGAAACGUCCGACGUCCAACAACU----AAC---AU ....((((((((((.....(((....((((.(((((((.((..(.....)..))))))))).))))....)))))))))))))...........----...---.. ( -31.40) >DroPse_CAF1 236518 97 + 1 -----CUG-GCGCUAAUUGUUGAUUAGUUUAAAGCCCGAUUACCAAACCGGCAGCGAGUUUAGAACGCUAUCAAACGUUCGACGCCGAGCAACAGUCGCCC---CA -----..(-(((((.....(((((..((((.((((.((....((.....))...)).)))).))))...)))))..(((((....)))))...)).)))).---.. ( -25.50) >DroSec_CAF1 163934 99 + 1 UCAAGUCGGGCGUUAAUUAUUGAUUAGUUUAAAGCCCGAUUAACAAACCGGCAACGGGCUUAGAACGAAACGAAACGUCCAACGUCCAACAACU----UCC---AU ....((.(((((((............((((.(((((((.((..(.....)..))))))))).))))...(((...)))..))))))).))....----...---.. ( -25.60) >DroEre_CAF1 180978 99 + 1 UCAAGCCGGGCGUUAAUUACUGAUUAGUUUAAAGCCCGAUUAACAAACCGGCAACGGGCUUAGAACGAAACGAAACGCCCGACGUACAACAACU----UCC---AA ....(.((((((((((((...)))).((((.(((((((.((..(.....)..))))))))).)))).......)))))))).)...........----...---.. ( -27.90) >DroWil_CAF1 261660 96 + 1 ------AAAGCGUUAAUUAUUGUUUAGUUUAAAGCUCGAUUAACAAUCCAGCAACGAGCUUAGAACGCCAGCAAACGUUCAACGCAAAACAACA----CACUAAAU ------...((((((((..(((((..((((.(((((((................))))))).))))...)))))..))).))))).........----........ ( -21.49) >DroAna_CAF1 275743 99 + 1 UCAAGUCGGGCGUUAAUUAUUGAUUAGUUUAAAGCCCGAUUACCAAACCGGCAGCGGGCUUAGAACGCCACGGAACGUCCGACGCCGAACAACU----UUG---UU ....((((((((((............((((.(((((((....((.....))...))))))).)))).(....)))))))))))...........----...---.. ( -33.90) >consensus UCAAGUCGGGCGUUAAUUAUUGAUUAGUUUAAAGCCCGAUUAACAAACCGGCAACGGGCUUAGAACGAAACGAAACGUCCGACGCCCAACAACU____UCC___AU ......((((((((...((.....))((((.(((((((................))))))).)))).......))))))))......................... (-18.47 = -18.52 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:21 2006