| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 2,772,237 – 2,772,330 |
| Length | 93 |
| Max. P | 0.956680 |
| Location | 2,772,237 – 2,772,330 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 96.34 |
| Mean single sequence MFE | -29.55 |
| Consensus MFE | -27.50 |
| Energy contribution | -27.70 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.956680 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2772237 93 + 22224390 -----UGGUUUUCGGGUGCAGUUGCCUGUUACUUUAUUACAGGGCAAAAACCGAGUCCGGCGGAAGGAGAUGGAAGAGACAUCUCAUUCUUGUCUAAG -----.((..(((((......((((((((.........))).)))))...))))).))(((((((.((((((.......)))))).))).)))).... ( -30.00) >DroSec_CAF1 160003 93 + 1 -----UGGUUUUCGGGUGCAGUUGCCUGUUACUUUAUUACAGGGCAAAAACCGAGUCCGGCGGAAGGAGAUGGAAGAGACAUCUCAUUCUUGUCUAAG -----.((..(((((......((((((((.........))).)))))...))))).))(((((((.((((((.......)))))).))).)))).... ( -30.00) >DroSim_CAF1 136259 93 + 1 -----UGGUUUUCGGGUGCAGUUGCCUGUUACUUUAUUACAGGGCAAAAACCGAGUCCGGCGGAAGGAGAUGGAAGAGACAUCUCAUUCUUGUCUAAG -----.((..(((((......((((((((.........))).)))))...))))).))(((((((.((((((.......)))))).))).)))).... ( -30.00) >DroEre_CAF1 177307 95 + 1 ---GGUGGUUUUCGGGUGCAGUUGCCUGCUACUUUAUUACAGGGCAAAAACCGAGUCCGGCGGAAGGAGAUGGAAGAGACAUCUCAUUCUUGUCUAAG ---...((..(((((......((((((..............))))))...))))).))(((((((.((((((.......)))))).))).)))).... ( -29.04) >DroYak_CAF1 171564 98 + 1 GUGGUUGGUUUUCGGGUGCAGUUGGCUGCUACUUUAUUACAGGGCAAAAACCGAGUCCGGCGGAAGGAGAUGGAAGAGACAUCUCAUUCUUGUCUAAG ...(((((..(((((..((((....))))..(((......))).......))))).)))))((((.((((((.......)))))).))))........ ( -28.70) >consensus _____UGGUUUUCGGGUGCAGUUGCCUGUUACUUUAUUACAGGGCAAAAACCGAGUCCGGCGGAAGGAGAUGGAAGAGACAUCUCAUUCUUGUCUAAG ......((..(((((......((((((..............))))))...))))).))(((((((.((((((.......)))))).))).)))).... (-27.50 = -27.70 + 0.20)
| Location | 2,772,237 – 2,772,330 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 96.34 |
| Mean single sequence MFE | -21.66 |
| Consensus MFE | -19.66 |
| Energy contribution | -19.62 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.91 |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.890459 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2772237 93 - 22224390 CUUAGACAAGAAUGAGAUGUCUCUUCCAUCUCCUUCCGCCGGACUCGGUUUUUGCCCUGUAAUAAAGUAACAGGCAACUGCACCCGAAAACCA----- .........(((.((((((.......)))))).)))..........((((((((..((((.........))))((....))...)))))))).----- ( -20.80) >DroSec_CAF1 160003 93 - 1 CUUAGACAAGAAUGAGAUGUCUCUUCCAUCUCCUUCCGCCGGACUCGGUUUUUGCCCUGUAAUAAAGUAACAGGCAACUGCACCCGAAAACCA----- .........(((.((((((.......)))))).)))..........((((((((..((((.........))))((....))...)))))))).----- ( -20.80) >DroSim_CAF1 136259 93 - 1 CUUAGACAAGAAUGAGAUGUCUCUUCCAUCUCCUUCCGCCGGACUCGGUUUUUGCCCUGUAAUAAAGUAACAGGCAACUGCACCCGAAAACCA----- .........(((.((((((.......)))))).)))..........((((((((..((((.........))))((....))...)))))))).----- ( -20.80) >DroEre_CAF1 177307 95 - 1 CUUAGACAAGAAUGAGAUGUCUCUUCCAUCUCCUUCCGCCGGACUCGGUUUUUGCCCUGUAAUAAAGUAGCAGGCAACUGCACCCGAAAACCACC--- .........(((.((((((.......)))))).)))..........((((((((..((.......))..((((....))))...))))))))...--- ( -24.70) >DroYak_CAF1 171564 98 - 1 CUUAGACAAGAAUGAGAUGUCUCUUCCAUCUCCUUCCGCCGGACUCGGUUUUUGCCCUGUAAUAAAGUAGCAGCCAACUGCACCCGAAAACCAACCAC .........(((.((((((.......)))))).)))....((....((((((((..((.......))..((((....))))...))))))))..)).. ( -21.20) >consensus CUUAGACAAGAAUGAGAUGUCUCUUCCAUCUCCUUCCGCCGGACUCGGUUUUUGCCCUGUAAUAAAGUAACAGGCAACUGCACCCGAAAACCA_____ .........(((.((((((.......)))))).)))..........((((((((..((((.........))))((....))...))))))))...... (-19.66 = -19.62 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:19 2006