Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 2,759,364 – 2,759,454 |
Length | 90 |
Max. P | 0.961490 |
Location | 2,759,364 – 2,759,454 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 79.89 |
Mean single sequence MFE | -32.62 |
Consensus MFE | -20.32 |
Energy contribution | -21.64 |
Covariance contribution | 1.32 |
Combinations/Pair | 1.09 |
Mean z-score | -2.39 |
Structure conservation index | 0.62 |
SVM decision value | 1.53 |
SVM RNA-class probability | 0.961490 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 2759364 90 + 22224390 GUGGGCGUUGCGUCCGCCCUGCAUG---------CCCCCACGAAGAAUCUCAGUGUCUCAGCAUGUGUAUUUGCACUUGGCAACUUAACGCUGAGGUUU (((((.((((((.......)))).)---------).)))))...((((((((((((....((..((((....))))...))......)))))))))))) ( -32.80) >DroSec_CAF1 147391 90 + 1 GUGGGCGUUGCGUCCGCCCUCCAUG---------CCCCCACAAAGAAUCUCAGUGUCUCAGCAUGUGUAUUUGCACUUGGCAACUUAACGCUGAGGUUU (((((.(..((((.........)))---------)))))))...((((((((((((....((..((((....))))...))......)))))))))))) ( -29.30) >DroEre_CAF1 164020 79 + 1 GUGGGCGUGC-----------CAUG---------CCCCCACCAAGAAUCUCAGUGUCUCAGCAUGUGUAUUUGCACUUGGCAACUUAGCGCUGAGGUUU (((((.((..-----------...)---------).)))))...((((((((((((....((..((((....))))...))......)))))))))))) ( -29.20) >DroYak_CAF1 157912 90 + 1 GUGGGCGUGGCGUGCGCCCUGCAUG---------CCCCCACCAAGAAUCUCAGUGUCUCAGCAUGUGUAUUUGCACUUGGCAACUUAACGCUGAGGUUU (((((...(((((((.....)))))---------)))))))...((((((((((((....((..((((....))))...))......)))))))))))) ( -39.10) >DroAna_CAF1 251623 91 + 1 GGGGGCGUGGCAAGGACUCC-CACUCCCCCUCUUCCCCCUCG-------UGUAGGUCUCAGCAUGUGUAUUUGCACUUGGCAACUUAACGCUGAGGUUU (((((.((((.........)-))).))))).......(((((-------(((((((....((..((((....))))...)).)))).)))).))))... ( -32.70) >consensus GUGGGCGUGGCGUCCGCCCU_CAUG_________CCCCCACCAAGAAUCUCAGUGUCUCAGCAUGUGUAUUUGCACUUGGCAACUUAACGCUGAGGUUU (((((...............................)))))...((((((((((((....((..((((....))))...))......)))))))))))) (-20.32 = -21.64 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:18 2006